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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0174200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0146) R2 : 0.0326
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.121 (0.0308) R2dN8 : 0.0421 R2N8 : 0.0326
σ : 0.275
deviance : 34.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
10.68 0.154 13.3 0.39 0.494 0.451 -0.12 0.734 0.12 23.1 19.4 6068 -- --
11.22 0.156 13.4 0.315 0.503 0.269 -0.123 -- 0.0838 23 20 6079 -- --
10.7 0.152 13.3 0.385 0.493 0.497 -- 0.811 0.12 23.1 19.1 6109 -- --
11.25 0.156 13.4 0.343 0.494 0.234 -- -- 0.101 23.1 20.03 6080 -- --
25.7 0.236 13.3 0.378 -- 0.56 -- 0.915 0.112 -- 19.4 6596 -- --
12.15 0.163 13.3 0.503 0.497 -- -0.109 -- 0.174 23.1 -- -- -- --
12.2 0.164 13.3 0.507 0.497 -- -- -- 0.174 23.1 -- -- -- --
25.54 0.235 13.3 0.393 -- 0.253 -- -- 0.137 -- 21.8 2378 -- --
12.31 0.163 13.4 -- 0.492 0.41 -- -- 0.0196 23.1 18.49 47520 -- --
27.62 0.246 13.3 0.519 -- -- -- -- 0.178 -- -- -- -- --
18.99 0.204 13.4 -- 0.502 -- -- -- 0.118 23.2 -- -- -- --
27.38 0.244 13.4 -- -- 0.429 -- -- 0.0177 -- 18.45 47520 -- --
34.73 0.275 13.3 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.50 wind 1.0 43200 > th dose independent rect. 4 4
2 10.53 humidity 70.0 1440 > th dose dependent rect. 9 1
3 10.54 wind 1.0 43200 > th dose independent rect. 5 2
4 10.55 wind 3.0 43200 < th dose dependent rect. 5 1
5 10.55 humidity 70.0 1440 > th dose dependent rect. 8 3
6 10.56 humidity 80.0 1440 > th dose independent rect. 8 4
8 10.59 humidity 80.0 1440 > th dose independent rect. 3 9
16 10.63 humidity 80.0 1440 < th dose independent rect. 8 4
18 10.64 precipitation 0.1 1440 > th dose dependent rect. 5 3
19 10.65 precipitation 0.1 1440 < th dose independent rect. 5 1
21 10.65 precipitation 0.1 1440 > th dose independent rect. 5 3
22 10.65 wind 1.0 43200 < th dose independent rect. 4 4
23 10.65 wind 5.0 4320 > th dose independent rect. 20 7
24 10.65 precipitation 0.1 1440 < th dose dependent rect. 5 1
29 10.66 wind 5.0 4320 < th dose independent rect. 20 7
30 10.66 humidity 80.0 1440 < th dose independent rect. 3 9
33 10.67 humidity 80.0 1440 < th dose independent rect. 24 12
46 10.69 precipitation 0.1 14400 > th dose independent rect. 4 13
47 10.69 precipitation 0.1 14400 < th dose independent rect. 4 13
50 10.69 precipitation 0.1 1440 > th dose dependent rect. 5 6
52 10.69 precipitation 0.1 14400 < th dose dependent rect. 4 13
53 10.70 temperature 20.0 4320 > th dose independent rect. 22 1
59 10.70 humidity 80.0 1440 > th dose independent rect. 24 12
60 10.70 humidity 80.0 4320 < th dose independent rect. 20 16
61 10.70 wind 1.0 43200 < th dose dependent rect. 12 1
62 10.71 temperature 20.0 4320 > th dose independent rect. 3 1
68 10.71 precipitation 0.1 1440 > th dose independent rect. 5 6
76 10.72 temperature 20.0 4320 < th dose independent rect. 3 1
77 10.72 temperature 20.0 4320 < th dose independent rect. 21 2
80 10.72 precipitation 0.1 14400 > th dose dependent rect. 4 13
81 10.73 wind 3.0 14400 < th dose independent rect. 5 1
86 10.73 wind 1.0 43200 > th dose independent rect. 23 8
90 10.74 precipitation 0.1 1440 > th dose independent rect. 5 1
100 10.74 wind 5.0 4320 > th dose dependent rect. 20 8
108 10.75 humidity 80.0 4320 > th dose independent rect. 21 15
121 10.76 wind 1.0 43200 < th dose independent rect. 22 9
124 10.76 temperature 20.0 4320 < th dose dependent rect. 3 1
139 10.77 precipitation 0.1 14400 > th dose dependent rect. 4 10
143 10.78 humidity 80.0 4320 < th dose independent rect. 20 6
166 10.79 precipitation 0.1 1440 < th dose independent rect. 5 8
172 10.79 precipitation 0.1 14400 > th dose dependent sin 3 NA
176 10.79 wind 3.0 14400 < th dose dependent rect. 23 3
180 10.79 precipitation 0.1 1440 < th dose dependent rect. 5 8
193 10.80 temperature 20.0 4320 > th dose independent rect. 18 10
206 10.80 wind 5.0 4320 > th dose dependent rect. 21 6
210 10.80 wind 3.0 14400 < th dose dependent rect. 23 8
214 10.81 precipitation 0.1 14400 > th dose independent sin 2 NA
215 10.81 precipitation 0.1 14400 < th dose independent sin 2 NA
230 10.81 temperature 20.0 4320 < th dose independent rect. 15 13
240 10.81 precipitation 0.1 14400 < th dose dependent sin 2 NA
250 10.81 temperature 20.0 4320 < th dose dependent rect. 20 8
264 10.82 temperature 20.0 4320 < th dose independent rect. 19 9
306 10.83 temperature 20.0 4320 > th dose independent sin 16 NA
313 10.83 precipitation 0.1 1440 < th dose independent rect. 1 6
316 10.83 precipitation 0.1 1440 > th dose independent rect. 1 10
335 10.83 precipitation 0.1 1440 < th dose dependent rect. 1 6
336 10.83 wind 3.0 14400 < th dose dependent rect. 1 7
349 10.84 temperature 20.0 4320 < th dose independent sin 16 NA
353 10.84 precipitation 0.1 1440 < th dose independent rect. 1 10
374 10.84 temperature 20.0 4320 < th dose dependent sin 14 NA
381 10.84 humidity 80.0 1440 < th dose dependent rect. 21 3
399 10.84 precipitation 0.1 1440 < th dose dependent rect. 1 10
417 10.85 temperature 20.0 4320 < th dose independent rect. 20 4
419 10.85 precipitation 0.1 1440 > th dose independent rect. 1 7
446 10.85 humidity 90.0 1440 < th dose dependent rect. 9 1
494 10.86 precipitation 0.1 14400 > th dose independent rect. 4 10
522 10.86 temperature 20.0 4320 < th dose dependent sin 11 NA
524 10.86 wind 3.0 14400 < th dose dependent rect. 1 1
540 10.86 precipitation 0.1 1440 > th dose dependent rect. 1 10
541 10.86 wind 1.0 43200 < th dose dependent rect. 2 11
559 10.87 wind 3.0 1440 < th dose independent rect. 2 1
580 10.87 temperature 20.0 4320 < th dose independent rect. 15 9
587 10.87 precipitation 0.1 14400 < th dose independent rect. 4 10
598 10.87 temperature 20.0 270 > th dose independent rect. 1 15
626 10.87 precipitation 0.1 14400 < th dose dependent rect. 4 10
653 10.88 wind 3.0 1440 > th dose independent rect. 2 1
667 10.88 temperature 20.0 4320 > th dose independent rect. 14 10
696 10.88 temperature 20.0 4320 > th dose independent rect. 2 21
699 10.88 temperature 20.0 4320 > th dose independent rect. 6 22
700 10.88 temperature 20.0 4320 < th dose dependent sin 8 NA
713 10.88 precipitation 0.1 1440 > th dose dependent rect. 1 7
718 10.88 precipitation 0.1 14400 > th dose dependent rect. 3 8
781 10.88 temperature 20.0 4320 < th dose dependent rect. 1 22
790 10.89 wind 1.0 43200 > th dose independent sin 8 NA
793 10.89 humidity 80.0 4320 < th dose independent sin 8 NA
847 10.89 temperature 20.0 4320 < th dose independent rect. 2 21
857 10.89 temperature 20.0 4320 < th dose dependent no NA NA
940 10.90 wind 1.0 43200 < th dose independent sin 8 NA
944 10.90 wind 9.0 14400 < th dose independent rect. 10 1
959 10.90 humidity 80.0 4320 > th dose independent rect. 20 7