Os02g0174000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os02g0174000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.49 | 0.492 | 6.67 | 1.63 | 0.23 | -1.57 | 1.51 | 3.07 | 0.686 | 11.4 | 19.21 | 1145 | -- | -- |
| 122.01 | 0.514 | 6.72 | 1.36 | 0.418 | -1.7 | 1.19 | -- | 0.682 | 11.6 | 13.71 | 10780 | -- | -- |
| 117.41 | 0.505 | 6.68 | 1.61 | 0.445 | -1.58 | -- | 2.63 | 0.668 | 12.5 | 17.59 | 1731 | -- | -- |
| 122.63 | 0.516 | 6.77 | 1.02 | 0.278 | -1.64 | -- | -- | 0.49 | 11.5 | 11.57 | 2457 | -- | -- |
| 123.79 | 0.518 | 6.69 | 1.57 | -- | -1.64 | -- | 1.99 | 0.661 | -- | 17.5 | 2420 | -- | -- |
| 168.57 | 0.609 | 6.84 | 0.335 | 0.471 | -- | 1.25 | -- | 0.153 | 11.7 | -- | -- | -- | -- |
| 175.33 | 0.62 | 6.84 | 0.386 | 0.466 | -- | -- | -- | 0.159 | 11.9 | -- | -- | -- | -- |
| 127.08 | 0.525 | 6.77 | 1.04 | -- | -1.75 | -- | -- | 0.509 | -- | 11.89 | 2398 | -- | -- |
| 141.2 | 0.553 | 6.81 | -- | 0.218 | -1.36 | -- | -- | 0.329 | 13.3 | 18.28 | 877 | -- | -- |
| 188.98 | 0.642 | 6.85 | 0.372 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 179.25 | 0.626 | 6.85 | -- | 0.461 | -- | -- | -- | 0.116 | 11.9 | -- | -- | -- | -- |
| 142.95 | 0.557 | 6.81 | -- | -- | -1.28 | -- | -- | 0.325 | -- | 20.34 | 975 | -- | -- |
| 192.62 | 0.648 | 6.86 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.21 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 2 | 107.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 5 | 108.37 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 12 | 108.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 20 | 109.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 35 | 109.86 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 36 | 109.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 40 | 109.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 43 | 109.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 44 | 109.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 50 | 110.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 55 | 110.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 67 | 110.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 85 | 110.68 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 100 | 110.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 107 | 110.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 130 | 111.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 132 | 111.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 137 | 111.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 147 | 111.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 148 | 111.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 152 | 111.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 155 | 111.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 156 | 111.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 172 | 111.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 173 | 111.34 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 193 | 111.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 209 | 111.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 304 | 111.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 397 | 111.85 | humidity | 80 | 14400 | > th | dose dependent | sin | 13 | NA |
| 418 | 111.90 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 446 | 111.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 470 | 112.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 472 | 112.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 606 | 112.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 8 |
| 624 | 112.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 630 | 112.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 652 | 112.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 681 | 112.53 | humidity | 90 | 14400 | < th | dose independent | sin | 14 | NA |