Os02g0173900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Succinate-semialdehyde dehydrogenase (EC 1.2.1.16).
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Os02g0173900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Succinate-semialdehyde dehydrogenase (EC 1.2.1.16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.72 | 0.229 | 11.5 | -0.549 | 0.178 | 0.21 | -0.122 | -2.92 | 0.0881 | 20.2 | 14.3 | 593 | -- | -- |
| 28.62 | 0.249 | 11.4 | -0.105 | 0.211 | 0.211 | -0.672 | -- | 0.201 | 20 | 14.95 | 1006 | -- | -- |
| 23.75 | 0.227 | 11.5 | -0.547 | 0.178 | 0.205 | -- | -3.01 | 0.0855 | 20.3 | 13.91 | 571 | -- | -- |
| 30.16 | 0.256 | 11.4 | -0.0659 | 0.179 | 0.227 | -- | -- | 0.21 | 19.8 | 12.42 | 945 | -- | -- |
| 25.14 | 0.234 | 11.5 | -0.599 | -- | 0.371 | -- | -2.98 | 0.0586 | -- | 13.16 | 612 | -- | -- |
| 29.3 | 0.254 | 11.4 | -0.0217 | 0.211 | -- | -0.757 | -- | 0.248 | 19.8 | -- | -- | -- | -- |
| 30.88 | 0.26 | 11.4 | -0.00347 | 0.211 | -- | -- | -- | 0.246 | 20.3 | -- | -- | -- | -- |
| 31.52 | 0.261 | 11.4 | -0.094 | -- | 0.34 | -- | -- | 0.191 | -- | 6.157 | 793 | -- | -- |
| 30.26 | 0.256 | 11.4 | -- | 0.183 | 0.199 | -- | -- | 0.219 | 19.9 | 14.19 | 941 | -- | -- |
| 33.35 | 0.27 | 11.4 | -0.00475 | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
| 30.88 | 0.26 | 11.4 | -- | 0.211 | -- | -- | -- | 0.247 | 20.3 | -- | -- | -- | -- |
| 31.73 | 0.262 | 11.4 | -- | -- | 0.304 | -- | -- | 0.206 | -- | 7.514 | 781 | -- | -- |
| 33.35 | 0.27 | 11.4 | -- | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 5 | 23.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 6 | 23.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 45 | 23.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 56 | 23.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 69 | 23.61 | temperature | 15 | 720 | > th | dose dependent | sin | 23 | NA |
| 81 | 23.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 87 | 23.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 90 | 23.64 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 100 | 23.64 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 122 | 23.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 151 | 23.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 179 | 23.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 186 | 23.78 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 190 | 23.78 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 192 | 23.78 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 202 | 23.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 205 | 23.79 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 216 | 23.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 246 | 23.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 249 | 23.85 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 297 | 23.89 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 315 | 23.90 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 399 | 23.96 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 418 | 23.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 423 | 23.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 440 | 24.00 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 441 | 24.00 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 463 | 24.02 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 475 | 24.03 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 504 | 24.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 505 | 24.04 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 521 | 24.05 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 523 | 24.06 | radiation | 1 | 4320 | < th | dose dependent | sin | 14 | NA |
| 525 | 24.06 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 534 | 24.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 535 | 24.07 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 547 | 24.08 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 583 | 24.11 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 585 | 24.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 596 | 24.11 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 636 | 24.13 | radiation | 10 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 681 | 24.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 686 | 24.15 | humidity | 90 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 704 | 24.16 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 734 | 24.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 736 | 24.17 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 737 | 24.17 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 741 | 24.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 757 | 24.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 763 | 24.18 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 765 | 24.18 | wind | 3 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 769 | 24.18 | radiation | 40 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 818 | 24.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 836 | 24.21 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 837 | 24.21 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 850 | 24.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 868 | 24.22 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 875 | 24.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 946 | 24.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 949 | 24.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 952 | 24.25 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 1 |