Os02g0173300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0173300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.41 | 0.803 | 7.13 | -3.27 | 3.6 | 3.33 | 1.7 | -0.745 | -0.483 | 22.5 | 20.29 | 634 | 17.6 | 16.9 |
| 292.67 | 0.797 | 7.11 | -3.09 | 3.64 | 3.3 | 1.75 | -- | -0.441 | 22.5 | 19.97 | 630 | 17.7 | 17 |
| 304.29 | 0.812 | 7.14 | -3.34 | 3.59 | 3.36 | -- | -0.827 | -0.504 | 22.5 | 20.32 | 633 | 17.6 | 16.9 |
| 304.97 | 0.813 | 7.11 | -3.13 | 3.63 | 3.35 | -- | -- | -0.42 | 22.4 | 19.87 | 634 | 17.6 | 17 |
| 335.79 | 0.853 | 6.91 | -2.48 | -- | 5.11 | -- | 2.23 | -0.00732 | -- | -24.56 | 1705 | 14.8 | 12.9 |
| 544.73 | 1.09 | 6.92 | -2.25 | 3.28 | -- | 1.65 | -- | 0.312 | 23.5 | -- | -- | -- | -- |
| 556.45 | 1.1 | 6.93 | -2.32 | 3.27 | -- | -- | -- | 0.306 | 23.4 | -- | -- | -- | -- |
| 332.92 | 0.85 | 6.99 | -3.13 | -- | 5.56 | -- | -- | -0.242 | -- | -14.3 | 1719 | 15.3 | 12.1 |
| 543.99 | 1.09 | 7.05 | -- | 3.42 | 3.1 | -- | -- | -0.017 | 21.8 | 21.3 | 605 | 17.9 | 14.6 |
| 1229.07 | 1.64 | 6.85 | -2.23 | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
| 697.75 | 1.24 | 6.87 | -- | 3.25 | -- | -- | -- | 0.564 | 23.4 | -- | -- | -- | -- |
| 608.6 | 1.15 | 6.94 | -- | -- | 4.97 | -- | -- | 0.0665 | -- | -20.61 | 1724 | 15.3 | 11.6 |
| 1360.1 | 1.72 | 6.79 | -- | -- | -- | -- | -- | 0.587 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 301.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 4 | 304.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 5 | 305.02 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 20 | 308.38 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 60 | 310.91 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 77 | 311.75 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 87 | 311.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 254 | 316.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 263 | 316.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 343 | 317.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 358 | 317.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 458 | 318.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 460 | 318.83 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 465 | 318.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 472 | 318.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 504 | 319.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 520 | 319.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 725 | 321.47 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 788 | 321.97 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 898 | 322.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |