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Os02g0173200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : VQ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.45 (0.0351) R2 : 0.323
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.04 (0.0847) R2dC : 0.226 R2C : 0.197
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.599 (0.0737) R2dN8 : 0.127 R2N8 : 0.0973
σ : 0.661
deviance : 199.58
__
_____
C
peak time of C : 22.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.86 0.612 9.61 -0.917 0.965 1.21 1.04 -6.52 0.399 22.2 26 3924 -- --
176.98 0.62 9.52 -0.047 0.978 0.763 0.994 -- 0.331 22.4 11.65 22646 -- --
174.05 0.614 9.61 -0.954 0.967 1.23 -- -6.62 0.419 22.2 26.3 3952 -- --
180 0.625 9.52 -0.0614 1 0.756 -- -- 0.365 22.4 11.49 22689 -- --
228.11 0.703 9.6 -1.06 -- 1.41 -- -6.41 0.338 -- 25.33 3791 -- --
185.92 0.639 9.44 0.657 1.04 -- 0.938 -- 0.67 22.3 -- -- -- --
189.47 0.645 9.44 0.619 1.04 -- -- -- 0.668 22.3 -- -- -- --
242.53 0.725 9.49 -0.153 -- 0.898 -- -- 0.302 -- 12.46 23885 -- --
179.81 0.625 9.5 -- 1.02 0.759 -- -- 0.381 22.2 11.34 22744 -- --
255.29 0.747 9.41 0.635 -- -- -- -- 0.671 -- -- -- -- --
199.58 0.661 9.45 -- 1.04 -- -- -- 0.599 22.4 -- -- -- --
242.27 0.725 9.48 -- -- 0.843 -- -- 0.366 -- 11.81 22486 -- --
265.94 0.761 9.43 -- -- -- -- -- 0.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.20 temperature 30 4320 > th dose dependent rect. 8 1
29 164.03 wind 1 1440 > th dose independent rect. 11 1
30 164.20 temperature 30 4320 > th dose independent rect. 8 1
44 165.26 wind 1 4320 < th dose dependent rect. 6 1
45 165.44 temperature 30 4320 < th dose independent rect. 7 2
48 166.35 temperature 30 4320 < th dose independent rect. 19 14
65 167.07 wind 1 1440 < th dose dependent rect. 11 1
71 167.60 radiation 20 10 < th dose dependent rect. 1 15
73 167.88 wind 1 1440 < th dose dependent rect. 6 6
80 168.49 wind 1 4320 < th dose dependent rect. 6 3
81 168.53 atmosphere 1005 43200 < th dose independent rect. 19 1
84 168.70 humidity 90 14400 > th dose dependent rect. 3 5
85 168.71 radiation 1 14400 > th dose independent rect. 18 11
89 168.74 radiation 1 14400 > th dose independent rect. 18 1
99 168.81 atmosphere 1005 43200 > th dose independent rect. 19 4
107 168.90 wind 1 1440 < th dose independent rect. 11 1
111 168.96 radiation 1 4320 > th dose independent rect. 18 14
115 169.06 atmosphere 1005 43200 < th dose independent rect. 18 6
123 169.10 atmosphere 1005 43200 < th dose independent rect. 19 4
128 169.14 atmosphere 1005 43200 > th dose independent rect. 18 7
134 169.19 wind 1 1440 > th dose independent rect. 6 6
151 169.36 radiation 1 4320 < th dose independent rect. 18 14
182 169.60 radiation 1 4320 < th dose dependent rect. 18 14
186 169.61 radiation 1 43200 < th dose dependent rect. 19 10
192 169.64 atmosphere 1005 43200 < th dose independent rect. 22 4
193 169.65 radiation 1 43200 < th dose dependent rect. 21 8
212 169.72 atmosphere 1005 43200 < th dose independent rect. 22 1
229 169.75 humidity 90 14400 > th dose dependent sin 5 NA
250 169.85 atmosphere 1005 43200 < th dose independent rect. 1 1
262 169.91 atmosphere 1005 43200 > th dose independent rect. 21 6
263 169.92 atmosphere 1005 43200 > th dose independent rect. 12 1
268 169.93 radiation 10 10 < th dose dependent sin 2 NA
270 169.96 atmosphere 1005 43200 > th dose independent rect. 22 1
275 169.97 radiation 40 1440 > th dose independent rect. 8 1
291 169.97 radiation 10 10 < th dose independent rect. 1 15
321 170.05 temperature 30 270 < th dose independent rect. 5 6
330 170.07 atmosphere 1005 43200 > th dose independent rect. 24 2
335 170.08 atmosphere 1005 43200 < th dose independent sin 13 NA
337 170.08 wind 1 1440 < th dose independent rect. 6 6
339 170.08 radiation 40 4320 < th dose dependent rect. 18 8
340 170.09 radiation 10 90 < th dose independent rect. 1 16
372 170.19 atmosphere 1005 43200 > th dose independent sin 13 NA
378 170.19 radiation 1 4320 < th dose dependent rect. 18 2
395 170.24 radiation 1 4320 < th dose dependent rect. 18 5
406 170.27 temperature 30 270 < th dose independent rect. 4 8
407 170.27 wind 1 270 > th dose independent rect. 11 18
409 170.28 radiation 1 14400 < th dose independent rect. 7 9
415 170.30 temperature 10 270 > th dose dependent rect. 22 8
427 170.34 humidity 50 270 > th dose independent rect. 10 8
429 170.35 atmosphere 1005 43200 < th dose independent rect. 12 1
432 170.35 radiation 1 43200 < th dose dependent rect. 4 1
441 170.37 radiation 1 14400 < th dose independent rect. 7 6
452 170.39 radiation 1 14400 > th dose independent rect. 7 9
458 170.41 radiation 1 14400 < th dose independent rect. 18 7
466 170.42 radiation 1 14400 < th dose independent rect. 18 11
481 170.45 atmosphere 1005 43200 < th dose independent rect. 10 19
484 170.46 radiation 1 14400 < th dose independent rect. 18 2
488 170.47 radiation 1 14400 < th dose independent rect. 18 5
490 170.47 atmosphere 1005 43200 < th dose independent rect. 10 16
496 170.48 radiation 1 14400 < th dose dependent rect. 6 2
521 170.52 wind 7 270 < th dose independent rect. 15 9
524 170.52 humidity 50 270 > th dose independent rect. 24 17
529 170.53 radiation 1 14400 > th dose independent rect. 7 6
562 170.59 humidity 50 270 > th dose independent rect. 11 18
571 170.61 wind 9 43200 > th dose independent rect. 16 1
572 170.61 radiation 1 4320 < th dose dependent rect. 4 4
579 170.62 atmosphere 1005 43200 > th dose independent rect. 10 18
581 170.62 atmosphere 1005 43200 > th dose independent rect. 10 20
588 170.63 radiation 40 1440 < th dose independent rect. 21 12
596 170.64 wind 7 270 < th dose independent rect. 5 18
604 170.65 radiation 1 4320 < th dose dependent rect. 21 11
648 170.71 atmosphere 1005 43200 < th dose independent rect. 16 22
673 170.74 atmosphere 1005 43200 < th dose independent rect. 18 23
681 170.76 radiation 40 1440 < th dose independent rect. 7 2
720 170.79 atmosphere 1005 43200 > th dose independent rect. 16 21
734 170.80 atmosphere 1005 43200 > th dose independent rect. 18 20
750 170.82 atmosphere 1005 43200 < th dose independent no NA NA
755 170.82 atmosphere 1005 43200 < th dose independent rect. 3 23
785 170.86 radiation 1 4320 > th dose independent rect. 6 2
833 170.90 radiation 1 4320 < th dose independent rect. 6 2
850 170.91 atmosphere 1005 43200 < th dose independent rect. 21 23
866 170.93 temperature 30 270 < th dose independent rect. 19 15
926 170.98 atmosphere 1005 43200 > th dose independent no NA NA
942 170.99 atmosphere 1005 43200 > th dose independent rect. 3 23
953 171.01 radiation 40 1440 < th dose independent rect. 19 14