Os02g0168800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Porphobilinogen deaminase (Fragment).
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Os02g0168800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Porphobilinogen deaminase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.99 | 0.385 | 12.8 | -0.621 | 0.912 | 1.09 | 0.839 | 0.653 | -0.568 | 21.1 | 22.86 | 139 | -- | -- |
| 67.19 | 0.382 | 12.8 | -0.725 | 0.89 | 1.13 | 0.806 | -- | -0.592 | 21.1 | 23.1 | 159 | -- | -- |
| 69.28 | 0.388 | 12.8 | -0.643 | 0.888 | 1.06 | -- | 0.69 | -0.562 | 21 | 23.05 | 162 | -- | -- |
| 69.35 | 0.388 | 12.8 | -0.75 | 0.864 | 1.13 | -- | -- | -0.593 | 21 | 23.14 | 183 | -- | -- |
| 92.84 | 0.449 | 12.8 | -0.725 | -- | 1.47 | -- | 0.745 | -0.576 | -- | 24.08 | 538 | -- | -- |
| 88.58 | 0.441 | 12.8 | -0.503 | 1.12 | -- | 0.973 | -- | -0.435 | 19.5 | -- | -- | -- | -- |
| 91.17 | 0.447 | 12.8 | -0.525 | 1.12 | -- | -- | -- | -0.433 | 19.4 | -- | -- | -- | -- |
| 92.61 | 0.448 | 12.8 | -0.821 | -- | 1.5 | -- | -- | -0.606 | -- | 24.1 | 539 | -- | -- |
| 83.09 | 0.425 | 12.8 | -- | 0.894 | 0.933 | -- | -- | -0.469 | 20.6 | 23.8 | 174 | -- | -- |
| 157.97 | 0.587 | 12.7 | -0.543 | -- | -- | -- | -- | -0.451 | -- | -- | -- | -- | -- |
| 98.42 | 0.464 | 12.7 | -- | 1.12 | -- | -- | -- | -0.375 | 19.4 | -- | -- | -- | -- |
| 109.93 | 0.488 | 12.7 | -- | -- | 1.37 | -- | -- | -0.492 | -- | 24.4 | 519 | -- | -- |
| 165.74 | 0.601 | 12.7 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.11 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 6 | 62.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 7 | 62.80 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 10 | 63.35 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 29 | 64.34 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 30 | 64.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 42 | 64.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 50 | 65.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 58 | 65.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 64 | 65.26 | temperature | 25.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 78 | 65.45 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 123 | 65.83 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 124 | 65.83 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 188 | 66.39 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 193 | 66.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 196 | 66.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 197 | 66.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 293 | 67.09 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 330 | 67.28 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 361 | 67.41 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 417 | 67.61 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 421 | 67.63 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 435 | 67.67 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 497 | 67.93 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 539 | 68.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 599 | 68.31 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 616 | 68.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 692 | 68.59 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 702 | 68.61 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 722 | 68.66 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 726 | 68.66 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 752 | 68.72 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 769 | 68.76 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 783 | 68.79 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 810 | 68.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 814 | 68.87 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 925 | 69.10 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 4 |