Os02g0168100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase).
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Os02g0168100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.48 | 0.469 | 13.9 | 0.133 | 2.74 | -0.793 | 0.416 | 0.6 | -0.384 | 8.04 | 63.07 | 695 | -- | -- |
| 99.85 | 0.465 | 13.9 | 0.142 | 2.75 | -0.75 | 0.547 | -- | -0.392 | 8.03 | 63.33 | 697 | -- | -- |
| 99.91 | 0.466 | 13.9 | 0.143 | 2.73 | -0.785 | -- | 0.832 | -0.384 | 8.05 | 63.63 | 697 | -- | -- |
| 100.74 | 0.467 | 13.9 | 0.157 | 2.73 | -0.709 | -- | -- | -0.396 | 8.04 | 63.5 | 706 | -- | -- |
| 293.99 | 0.799 | 14 | 0.364 | -- | 1.85 | -- | -0.411 | -0.437 | -- | 79.98 | 648 | -- | -- |
| 112.23 | 0.497 | 14 | 0.23 | 2.5 | -- | 0.194 | -- | -0.509 | 8.07 | -- | -- | -- | -- |
| 112.35 | 0.496 | 14 | 0.236 | 2.5 | -- | -- | -- | -0.509 | 8.07 | -- | -- | -- | -- |
| 294.53 | 0.799 | 14 | 0.335 | -- | 1.86 | -- | -- | -0.443 | -- | 79.96 | 648 | -- | -- |
| 101.38 | 0.469 | 13.9 | -- | 2.74 | -0.727 | -- | -- | -0.41 | 8.04 | 63.47 | 708 | -- | -- |
| 454.75 | 0.996 | 14 | 0.258 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 113.81 | 0.499 | 14 | -- | 2.5 | -- | -- | -- | -0.535 | 8.07 | -- | -- | -- | -- |
| 297.37 | 0.803 | 14 | -- | -- | 1.84 | -- | -- | -0.475 | -- | 79.86 | 648 | -- | -- |
| 456.51 | 0.997 | 14 | -- | -- | -- | -- | -- | -0.507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 2 | 86.02 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 5 | 87.28 | humidity | 60.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 6 | 87.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 33 | 91.88 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 34 | 91.92 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 16 | 3 |
| 35 | 92.14 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 36 | 92.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 37 | 92.18 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 41 | 92.39 | humidity | 70.0 | 10 | > th | dose independent | rect. | 14 | 7 |
| 47 | 92.61 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 64 | 93.30 | humidity | 60.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 76 | 93.68 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 7 |
| 79 | 93.74 | humidity | 60.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 86 | 93.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 91 | 93.94 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 124 | 94.63 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 18 |
| 125 | 94.66 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 128 | 94.75 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 136 | 95.00 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 161 | 95.33 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 12 |
| 166 | 95.39 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 18 |
| 201 | 95.78 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 16 | 12 |
| 204 | 95.80 | humidity | 60.0 | 30 | > th | dose independent | rect. | 16 | 18 |
| 211 | 95.85 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 220 | 95.94 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 221 | 95.95 | humidity | 60.0 | 720 | > th | dose independent | rect. | 7 | 10 |
| 223 | 95.95 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 237 | 96.06 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 242 | 96.10 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 14 |
| 250 | 96.16 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 269 | 96.28 | radiation | 10.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 274 | 96.37 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 282 | 96.48 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 298 | 96.58 | humidity | 70.0 | 10 | > th | dose independent | rect. | 2 | 19 |
| 306 | 96.62 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 318 | 96.66 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 326 | 96.72 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 329 | 96.74 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 333 | 96.76 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 12 | 4 |
| 335 | 96.79 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 14 |
| 338 | 96.81 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 4 |
| 342 | 96.82 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 343 | 96.82 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 351 | 96.86 | temperature | 25.0 | 30 | > th | dose independent | rect. | 16 | 7 |
| 352 | 96.86 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 356 | 96.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 363 | 96.93 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 1 |
| 397 | 97.11 | radiation | 10.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 406 | 97.14 | humidity | 70.0 | 10 | > th | dose independent | rect. | 1 | 22 |
| 422 | 97.22 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 19 |
| 426 | 97.23 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 468 | 97.41 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 482 | 97.48 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 497 | 97.54 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 500 | 97.54 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 506 | 97.58 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 515 | 97.61 | radiation | 10.0 | 10 | < th | dose independent | rect. | 13 | 10 |
| 522 | 97.62 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 548 | 97.69 | radiation | 10.0 | 10 | < th | dose independent | rect. | 13 | 8 |
| 570 | 97.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 14 |
| 571 | 97.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 579 | 97.79 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 8 |
| 595 | 97.86 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 630 | 97.95 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 16 | 8 |
| 643 | 97.99 | humidity | 60.0 | 720 | > th | dose independent | rect. | 7 | 20 |
| 649 | 98.01 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 2 |
| 692 | 98.11 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 11 |
| 715 | 98.16 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 737 | 98.21 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 739 | 98.23 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 22 |
| 744 | 98.25 | humidity | 80.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 768 | 98.30 | humidity | 70.0 | 10 | > th | dose independent | rect. | 7 | 14 |
| 791 | 98.36 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 795 | 98.37 | wind | 5.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 820 | 98.43 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 855 | 98.47 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 863 | 98.49 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 865 | 98.49 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 17 |
| 894 | 98.51 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 904 | 98.55 | radiation | 10.0 | 10 | > th | dose independent | rect. | 10 | 21 |
| 905 | 98.55 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 23 |
| 911 | 98.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 920 | 98.59 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 934 | 98.62 | temperature | 30.0 | 90 | < th | dose independent | rect. | 24 | 23 |
| 936 | 98.63 | radiation | 10.0 | 10 | < th | dose independent | sin | 20 | NA |
| 998 | 98.74 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 5 |