Os02g0167600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0167600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.48 | 0.64 | 11.6 | -0.478 | 1.51 | 2.27 | -1.32 | -4.09 | -0.747 | 15.7 | 58.9 | 110 | -- | -- |
| 193.71 | 0.648 | 11.6 | -0.378 | 1.42 | 1.84 | -1.93 | -- | -0.715 | 15.5 | 61.67 | 116 | -- | -- |
| 190.2 | 0.642 | 11.6 | -0.466 | 1.52 | 2.24 | -- | -4.78 | -0.747 | 15.8 | 58.62 | 103 | -- | -- |
| 197.41 | 0.654 | 11.6 | -0.331 | 1.01 | 1.36 | -- | -- | -0.8 | 16.8 | 88.54 | 70 | -- | -- |
| 215.31 | 0.683 | 11.6 | -0.462 | -- | 2.51 | -- | -2.41 | -0.884 | -- | 98.8 | 110 | -- | -- |
| 218.97 | 0.694 | 11.6 | -0.351 | 1.76 | -- | -1.24 | -- | -0.853 | 15.7 | -- | -- | -- | -- |
| 223.46 | 0.7 | 11.7 | -0.37 | 1.76 | -- | -- | -- | -0.86 | 15.8 | -- | -- | -- | -- |
| 224.54 | 0.698 | 11.6 | -0.431 | -- | 2.38 | -- | -- | -0.907 | -- | 135.7 | 115 | -- | -- |
| 201.13 | 0.661 | 11.6 | -- | 1.06 | 1.38 | -- | -- | -0.836 | 16.5 | 102.1 | 64 | -- | -- |
| 394.31 | 0.928 | 11.6 | -0.443 | -- | -- | -- | -- | -0.907 | -- | -- | -- | -- | -- |
| 227.07 | 0.705 | 11.6 | -- | 1.77 | -- | -- | -- | -0.818 | 15.8 | -- | -- | -- | -- |
| 229.44 | 0.705 | 11.6 | -- | -- | 2.38 | -- | -- | -0.859 | -- | 125.3 | 112 | -- | -- |
| 399.48 | 0.933 | 11.6 | -- | -- | -- | -- | -- | -0.857 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.93 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 4 |
| 4 | 177.85 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 5 | 178.19 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 6 | 178.98 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 7 | 179.00 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 9 | 179.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 4 |
| 16 | 180.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 62 | 183.96 | humidity | 80 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 65 | 184.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 74 | 184.58 | radiation | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 75 | 184.61 | humidity | 60 | 270 | < th | dose dependent | rect. | 18 | 21 |
| 83 | 184.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 88 | 184.99 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 123 | 185.71 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 126 | 185.79 | humidity | 90 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 132 | 185.98 | humidity | 80 | 90 | < th | dose dependent | rect. | 22 | 21 |
| 149 | 186.19 | radiation | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 157 | 186.25 | humidity | 60 | 90 | < th | dose dependent | no | NA | NA |
| 159 | 186.25 | humidity | 60 | 90 | < th | dose dependent | rect. | 8 | 11 |
| 263 | 186.35 | humidity | 60 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 282 | 186.40 | humidity | 60 | 270 | < th | dose dependent | sin | 4 | NA |
| 291 | 186.44 | humidity | 70 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 328 | 186.58 | radiation | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 434 | 186.92 | humidity | 60 | 90 | < th | dose dependent | sin | 22 | NA |
| 500 | 187.41 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 527 | 187.55 | radiation | 30 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 534 | 187.57 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 550 | 187.64 | radiation | 40 | 720 | < th | dose dependent | sin | 12 | NA |
| 767 | 188.00 | humidity | 60 | 720 | > th | dose independent | rect. | 3 | 10 |
| 781 | 188.13 | humidity | 70 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 845 | 188.51 | humidity | 70 | 10 | < th | dose dependent | sin | 10 | NA |
| 848 | 188.51 | radiation | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 859 | 188.55 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 17 |
| 930 | 188.79 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 944 | 188.81 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 987 | 188.90 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 5 |