Os02g0167500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os02g0167500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.08 | 0.2 | 12.1 | -0.414 | 0.201 | 0.426 | 0.609 | 0.727 | 0.216 | 23.2 | 60.17 | 789 | -- | -- |
| 18.61 | 0.201 | 12.1 | -0.381 | 0.205 | 0.417 | 0.352 | -- | 0.221 | 0.0275 | 59.19 | 806 | -- | -- |
| 19.03 | 0.203 | 12.1 | -0.384 | 0.223 | 0.419 | -- | 0.125 | 0.221 | 1.12 | 52.68 | 898 | -- | -- |
| 19.05 | 0.203 | 12.1 | -0.378 | 0.216 | 0.411 | -- | -- | 0.214 | 1.28 | 52.1 | 905 | -- | -- |
| 19.58 | 0.206 | 12.1 | -0.421 | -- | 0.353 | -- | 0.383 | 0.216 | -- | 50.48 | 1784 | -- | -- |
| 21.45 | 0.217 | 12.1 | -0.393 | 0.162 | -- | 0.223 | -- | 0.205 | 3.7 | -- | -- | -- | -- |
| 21.55 | 0.217 | 12.1 | -0.397 | 0.168 | -- | -- | -- | 0.203 | 4.37 | -- | -- | -- | -- |
| 19.78 | 0.207 | 12.1 | -0.383 | -- | 0.388 | -- | -- | 0.224 | -- | 51.07 | 1823 | -- | -- |
| 22.74 | 0.222 | 12 | -- | 0.217 | 0.439 | -- | -- | 0.254 | 1.1 | 45.18 | 909 | -- | -- |
| 23.07 | 0.224 | 12.1 | -0.39 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 25.69 | 0.237 | 12 | -- | 0.161 | -- | -- | -- | 0.247 | 4.42 | -- | -- | -- | -- |
| 23.59 | 0.226 | 12 | -- | -- | 0.397 | -- | -- | 0.266 | -- | 40.41 | 1797 | -- | -- |
| 27.08 | 0.243 | 12 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 16.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 16.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 16.72 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 13 |
| 5 | 16.75 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 10 |
| 12 | 16.86 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 15 | 16.87 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 20 | 16.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 21 | 16.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 25 | 16.94 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 27 | 16.94 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 30 | 16.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 32 | 16.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 34 | 16.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 35 | 16.99 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 36 | 16.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 38 | 17.01 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 39 | 17.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 40 | 17.02 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 44 | 17.02 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 65 | 17.13 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 81 | 17.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 84 | 17.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 85 | 17.18 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 86 | 17.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 87 | 17.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 89 | 17.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 90 | 17.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 91 | 17.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 93 | 17.19 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 104 | 17.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 107 | 17.22 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 114 | 17.24 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 119 | 17.24 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 129 | 17.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 134 | 17.26 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 135 | 17.27 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 156 | 17.29 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 246 | 17.45 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 305 | 17.60 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 3 | NA |
| 307 | 17.60 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 3 | NA |
| 328 | 17.63 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 3 | NA |
| 329 | 17.63 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 346 | 17.64 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 354 | 17.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 378 | 17.71 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 381 | 17.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 385 | 17.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 390 | 17.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 400 | 17.73 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 4 | NA |
| 401 | 17.73 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 406 | 17.73 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 416 | 17.75 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 431 | 17.76 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 437 | 17.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 442 | 17.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 446 | 17.77 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 450 | 17.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 454 | 17.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 459 | 17.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 463 | 17.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 513 | 17.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 515 | 17.83 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 517 | 17.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 524 | 17.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 532 | 17.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 540 | 17.85 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 573 | 17.87 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 588 | 17.88 | humidity | 60.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 596 | 17.88 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 610 | 17.90 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 623 | 17.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 624 | 17.91 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 630 | 17.91 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 639 | 17.92 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 704 | 17.98 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 770 | 18.04 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 775 | 18.04 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 809 | 18.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 814 | 18.06 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 817 | 18.06 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 822 | 18.06 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 831 | 18.07 | humidity | 70.0 | 720 | > th | dose independent | rect. | 7 | 18 |
| 834 | 18.07 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 843 | 18.07 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 845 | 18.08 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 860 | 18.08 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 871 | 18.08 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 887 | 18.09 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 891 | 18.09 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 894 | 18.09 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 923 | 18.11 | humidity | 70.0 | 720 | > th | dose independent | rect. | 12 | 5 |
| 924 | 18.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 926 | 18.11 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 929 | 18.11 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 933 | 18.11 | humidity | 60.0 | 720 | > th | dose dependent | no | NA | NA |
| 946 | 18.12 | humidity | 70.0 | 720 | > th | dose independent | sin | 21 | NA |
| 947 | 18.12 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 987 | 18.13 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 6 |