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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0167200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.48 (0.133) R2 : 0.852
β1 : 7.03 (0.299) R2dD : 1.06 R2D : -1.92
β2 : 4.42 (0.0931) R2dC : 0.811 R2C : -0.718
β3 : -318 (19.3) R2dE : 169 R2E : -170
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -667 (40.7) R2dD*E : 166 R2D*E : -166
γ1 : 0.828 (0.0737) R2dN8 : 0.0561 R2N8 : -1.81
σ : 0.64
deviance : 188.6
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_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 15
memory length : 1441
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.98
open length of G : 17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.95 0.625 7.53 7.18 4.53 -319 2.27 -667 0.71 19.1 15 1442 7 17
212.83 0.685 5.41 2.42 4.34 -0.61 1.05 -- 0.651 19.3 14.91 1445 7.63 16.2
188.6 0.64 7.48 7.03 4.42 -318 -- -667 0.828 18.9 15 1441 6.98 17
213.3 0.685 5.42 2.4 4.48 -0.738 -- -- 0.605 19.3 15 1441 6.98 17
1036.71 1.51 5.29 2.44 -- 0.985 -- -0.457 0.676 -- 15 1441 6.98 17
222.05 0.699 5.41 2.44 4.04 -- 1.39 -- 0.642 19.9 -- -- -- --
227.62 0.707 5.41 2.41 4.04 -- -- -- 0.645 19.9 -- -- -- --
232.31 0.71 5.26 2.77 -- 4.16 -- -- 0.75 -- -58.49 2107 7.12 14.5
271.17 0.767 5.57 -- 4.03 1.59 -- -- -0.0929 19.9 20.19 47520 0.6 24
1116.42 1.56 5.31 2.36 -- -- -- -- 0.59 -- -- -- -- --
380.45 0.912 5.47 -- 4.03 -- -- -- 0.377 19.9 -- -- -- --
376.1 0.903 5.33 -- -- 4.04 -- -- 0.464 -- -64.7 2069 7.08 15.5
1263.77 1.66 5.36 -- -- -- -- -- 0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.97 temperature 15.0 1440 > th dose independent rect. 7 17
2 179.95 temperature 30.0 90 < th dose dependent rect. 23 7
3 181.23 atmosphere 995.0 90 > th dose dependent rect. 23 7
4 181.74 temperature 15.0 1440 > th dose independent rect. 7 7
6 182.61 temperature 30.0 270 < th dose dependent rect. 21 8
7 182.67 radiation 40.0 270 < th dose independent rect. 5 16
11 183.39 temperature 15.0 270 > th dose independent rect. 9 20
12 183.61 atmosphere 1000.0 90 > th dose independent rect. 23 7
17 184.63 temperature 15.0 270 > th dose independent rect. 10 18
18 184.63 temperature 10.0 270 > th dose dependent rect. 18 15
19 184.82 atmosphere 995.0 270 > th dose dependent rect. 21 8
24 185.18 radiation 1.0 270 < th dose dependent sin 10 NA
27 185.39 wind 7.0 270 < th dose independent rect. 9 20
30 185.63 radiation 40.0 270 < th dose independent rect. 5 5
31 185.69 wind 7.0 270 < th dose independent rect. 10 18
33 185.73 radiation 40.0 270 < th dose independent rect. 4 7
35 185.93 temperature 15.0 270 > th dose independent rect. 15 10
45 186.37 radiation 30.0 270 < th dose independent rect. 6 3
49 186.48 temperature 15.0 270 > th dose independent rect. 17 16
54 186.73 radiation 1.0 270 > th dose independent rect. 18 15
55 186.82 humidity 70.0 270 > th dose independent rect. 5 5
58 186.93 radiation 1.0 270 > th dose independent sin 10 NA
61 187.00 atmosphere 1000.0 270 > th dose independent rect. 21 8
66 187.10 radiation 1.0 270 > th dose independent rect. 4 5
82 187.27 radiation 1.0 270 < th dose independent sin 10 NA
101 187.92 temperature 30.0 270 < th dose independent rect. 4 6
112 188.45 precipitation 0.1 270 < th dose independent rect. 5 4
113 188.45 precipitation 0.1 270 < th dose dependent rect. 5 4
115 188.51 radiation 1.0 270 < th dose dependent rect. 21 10
117 188.62 wind 9.0 270 < th dose independent rect. 5 4
118 188.62 temperature 10.0 270 > th dose independent rect. 5 4
120 188.62 humidity 50.0 270 > th dose independent rect. 5 4
121 188.62 atmosphere 995.0 270 > th dose independent rect. 5 4
122 188.62 atmosphere 1015.0 270 < th dose independent rect. 5 4
132 188.73 precipitation 0.1 270 < th dose independent rect. 4 6
133 188.73 precipitation 0.1 270 < th dose dependent rect. 4 6
144 188.98 temperature 15.0 270 > th dose independent rect. 4 6
145 188.98 humidity 60.0 30 > th dose independent rect. 6 6
151 189.06 humidity 50.0 270 > th dose independent rect. 4 6
153 189.09 wind 9.0 270 < th dose independent rect. 4 6
154 189.09 radiation 40.0 270 < th dose dependent rect. 6 3
157 189.10 atmosphere 995.0 270 > th dose independent rect. 4 6
158 189.10 atmosphere 1015.0 270 < th dose independent rect. 4 6
213 189.80 humidity 50.0 270 > th dose dependent rect. 5 5
224 189.86 radiation 1.0 270 < th dose independent rect. 21 10
230 189.96 radiation 1.0 270 < th dose dependent rect. 21 19
242 190.25 atmosphere 1010.0 270 < th dose independent rect. 15 10
264 190.55 humidity 50.0 270 > th dose dependent rect. 6 3
268 190.65 atmosphere 1015.0 90 < th dose independent rect. 6 17
274 190.75 wind 5.0 90 < th dose independent rect. 23 7
277 190.78 radiation 40.0 270 < th dose dependent rect. 5 5
297 190.97 temperature 15.0 90 > th dose independent rect. 23 7
298 190.98 radiation 10.0 90 < th dose dependent rect. 23 8
305 191.05 temperature 10.0 270 > th dose dependent rect. 5 4
306 191.06 temperature 15.0 270 > th dose independent rect. 5 16
308 191.14 wind 7.0 10 < th dose independent rect. 12 18
310 191.14 wind 9.0 270 < th dose dependent rect. 5 4
316 191.20 wind 1.0 90 > th dose independent rect. 6 5
327 191.31 wind 7.0 270 < th dose independent rect. 21 8
355 191.50 precipitation 0.1 270 < th dose independent rect. 10 18
356 191.50 precipitation 0.1 270 < th dose dependent rect. 10 18
364 191.57 temperature 15.0 10 > th dose independent rect. 12 18
366 191.58 temperature 30.0 90 < th dose independent rect. 23 7
367 191.58 humidity 50.0 90 > th dose independent rect. 23 7
371 191.58 radiation 20.0 90 < th dose independent rect. 23 7
380 191.64 atmosphere 995.0 90 > th dose independent rect. 6 17
381 191.65 radiation 30.0 4320 < th dose independent rect. 24 7
399 191.80 temperature 10.0 270 > th dose independent rect. 21 8
400 191.80 temperature 30.0 270 < th dose independent rect. 21 8
401 191.80 humidity 50.0 270 > th dose independent rect. 21 8
405 191.80 radiation 20.0 270 < th dose independent rect. 21 8
409 191.81 radiation 40.0 270 < th dose dependent rect. 21 8
428 191.89 humidity 70.0 1440 > th dose independent rect. 24 7
429 191.90 wind 9.0 1440 < th dose independent rect. 24 7
436 191.95 humidity 60.0 30 > th dose independent rect. 6 17
443 191.98 humidity 50.0 270 > th dose dependent rect. 20 9
474 192.25 precipitation 0.1 270 < th dose independent rect. 5 16
475 192.25 precipitation 0.1 270 < th dose dependent rect. 5 16
484 192.36 temperature 10.0 720 > th dose dependent rect. 14 12
493 192.46 temperature 10.0 270 > th dose dependent rect. 16 9
505 192.63 wind 1.0 10 > th dose independent rect. 6 6
510 192.66 wind 9.0 270 < th dose dependent rect. 10 7
516 192.68 temperature 10.0 10 > th dose independent rect. 6 6
518 192.68 atmosphere 995.0 10 > th dose independent rect. 6 6
519 192.68 atmosphere 1015.0 10 < th dose independent rect. 6 6
520 192.68 precipitation 0.1 10 < th dose independent rect. 6 6
523 192.68 precipitation 0.1 10 < th dose dependent rect. 6 6
532 192.80 temperature 10.0 30 > th dose dependent sin 9 NA
535 192.83 wind 9.0 90 < th dose independent rect. 6 17
540 192.85 wind 7.0 270 < th dose independent rect. 10 7
546 192.90 precipitation 0.1 90 < th dose independent rect. 23 7
548 192.90 precipitation 0.1 90 < th dose dependent rect. 23 7
586 193.07 wind 9.0 10 < th dose independent rect. 6 6
591 193.08 humidity 50.0 90 > th dose dependent rect. 23 7
593 193.09 radiation 1.0 90 < th dose independent sin 7 NA
605 193.10 wind 9.0 270 < th dose dependent rect. 10 19
618 193.15 precipitation 0.1 270 < th dose independent rect. 21 8
619 193.15 precipitation 0.1 270 < th dose dependent rect. 21 8
682 193.49 radiation 1.0 90 > th dose independent sin 7 NA
723 193.65 humidity 90.0 90 < th dose independent rect. 6 5
751 193.74 radiation 1.0 10 > th dose independent rect. 6 6
756 193.75 temperature 10.0 1440 > th dose independent rect. 24 7
759 193.75 temperature 30.0 1440 < th dose independent rect. 24 7
763 193.75 humidity 50.0 1440 > th dose independent rect. 24 7
768 193.75 atmosphere 995.0 1440 > th dose independent rect. 24 7
782 193.76 atmosphere 995.0 1440 > th dose independent rect. 7 7
783 193.76 temperature 10.0 1440 > th dose independent rect. 14 17
838 193.89 atmosphere 1015.0 270 < th dose dependent rect. 16 9
862 193.99 radiation 40.0 270 < th dose independent sin 23 NA