Os02g0167000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0167000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.73 | 0.285 | 11.5 | -0.387 | 0.624 | -0.835 | 0.016 | -0.281 | 0.0677 | 2.41 | 25.24 | 243 | -- | -- |
| 36.84 | 0.283 | 11.5 | -0.427 | 0.614 | -0.807 | -0.0635 | -- | 0.0685 | 2.4 | 25.2 | 244 | -- | -- |
| 36.73 | 0.282 | 11.5 | -0.39 | 0.624 | -0.835 | -- | -0.271 | 0.0676 | 2.41 | 25.21 | 242 | -- | -- |
| 36.84 | 0.283 | 11.5 | -0.432 | 0.623 | -0.812 | -- | -- | 0.0588 | 2.39 | 25.23 | 236 | -- | -- |
| 49.24 | 0.327 | 11.5 | -0.345 | -- | -0.94 | -- | -0.633 | 0.0477 | -- | 25.2 | 967 | -- | -- |
| 46.43 | 0.319 | 11.5 | -0.224 | 0.502 | -- | -0.0207 | -- | 0.225 | 2.07 | -- | -- | -- | -- |
| 46.43 | 0.319 | 11.5 | -0.224 | 0.502 | -- | -- | -- | 0.225 | 2.06 | -- | -- | -- | -- |
| 49.48 | 0.328 | 11.5 | -0.462 | -- | -0.877 | -- | -- | 0.0464 | -- | 25.4 | 979 | -- | -- |
| 41.22 | 0.299 | 11.5 | -- | 0.567 | -0.715 | -- | -- | 0.161 | 2.03 | 23 | 193 | -- | -- |
| 61.55 | 0.367 | 11.5 | -0.203 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 47.75 | 0.323 | 11.5 | -- | 0.498 | -- | -- | -- | 0.25 | 2.05 | -- | -- | -- | -- |
| 54.39 | 0.343 | 11.5 | -- | -- | -0.675 | -- | -- | 0.133 | -- | 25.46 | 951 | -- | -- |
| 62.64 | 0.369 | 11.5 | -- | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 7 | 35.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 13 | 36.25 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 16 | 36.29 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 20 |
| 23 | 36.49 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 31 | 36.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 32 | 36.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 59 | 36.79 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 71 | 36.86 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 76 | 36.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 148 | 37.35 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 173 | 37.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 206 | 37.67 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 279 | 37.89 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 306 | 37.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 335 | 38.01 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 355 | 38.05 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 377 | 38.09 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 397 | 38.11 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 453 | 38.19 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 454 | 38.19 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 19 |
| 502 | 38.28 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 512 | 38.31 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 526 | 38.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 20 |
| 540 | 38.36 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 20 |
| 553 | 38.38 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 565 | 38.39 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 566 | 38.39 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 590 | 38.42 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 9 |
| 600 | 38.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 623 | 38.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 638 | 38.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 642 | 38.49 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 669 | 38.52 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 23 |
| 708 | 38.56 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 726 | 38.57 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 739 | 38.59 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 775 | 38.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 790 | 38.63 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 857 | 38.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 869 | 38.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 876 | 38.71 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 891 | 38.73 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 919 | 38.75 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 957 | 38.78 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 978 | 38.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 998 | 38.82 | wind | 5 | 14400 | < th | dose dependent | rect. | 23 | 8 |