Os02g0166300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0166300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.26 | 0.785 | 3.84 | 0.000195 | 0.275 | -2.71 | 0.327 | -3.79 | 0.345 | 16 | 20.09 | 5541 | -- | -- |
| 294.23 | 0.799 | 4 | -0.575 | 0.253 | -1.94 | 0.197 | -- | 0.206 | 16 | 20 | 6644 | -- | -- |
| 279.5 | 0.779 | 3.84 | 0.00292 | 0.276 | -2.71 | -- | -3.75 | 0.346 | 15.5 | 20.1 | 5477 | -- | -- |
| 290.8 | 0.794 | 4.01 | -0.504 | 0.259 | -1.86 | -- | -- | 0.156 | 15.7 | 21 | 6584 | -- | -- |
| 280.52 | 0.78 | 3.81 | -0.0191 | -- | -3.11 | -- | -4.86 | 0.334 | -- | 19.77 | 6590 | -- | -- |
| 358.97 | 0.888 | 3.88 | 0.79 | 0.2 | -- | 0.589 | -- | 0.779 | 17.4 | -- | -- | -- | -- |
| 359.61 | 0.888 | 3.87 | 0.791 | 0.21 | -- | -- | -- | 0.782 | 16.3 | -- | -- | -- | -- |
| 294.33 | 0.799 | 4.01 | -0.494 | -- | -1.83 | -- | -- | 0.158 | -- | 21.01 | 6550 | -- | -- |
| 280.47 | 0.78 | 3.99 | -- | 0.303 | -1.6 | -- | -- | 0.242 | 15 | 21.8 | 2437 | -- | -- |
| 361.99 | 0.889 | 3.87 | 0.782 | -- | -- | -- | -- | 0.776 | -- | -- | -- | -- | -- |
| 376.09 | 0.907 | 3.89 | -- | 0.195 | -- | -- | -- | 0.694 | 16.3 | -- | -- | -- | -- |
| 285.82 | 0.787 | 3.99 | -- | -- | -1.58 | -- | -- | 0.261 | -- | 21.78 | 2438 | -- | -- |
| 378.14 | 0.908 | 3.89 | -- | -- | -- | -- | -- | 0.69 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 2 | 271.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 3 | 272.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 12 | 273.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 14 | 273.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 63 | 275.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 73 | 275.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 3 |
| 85 | 275.49 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 100 | 275.73 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 191 | 277.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 380 | 280.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 419 | 281.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 431 | 281.55 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 495 | 282.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 530 | 282.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 581 | 282.69 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 596 | 282.79 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 602 | 282.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 667 | 283.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 674 | 283.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 691 | 283.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 692 | 283.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 694 | 283.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 697 | 283.79 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 893 | 285.46 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 987 | 285.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |