Os02g0166200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0166200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.11 | 0.475 | 9.31 | -7.23 | 1.28 | -192 | 0.523 | -396 | -0.0371 | 5.54 | 15 | 4442 | -- | -- |
| 122.23 | 0.519 | 12 | -0.939 | 1.29 | -2.67 | 0.388 | -- | 0.108 | 5.51 | 14.64 | 3949 | -- | -- |
| 102.75 | 0.472 | 9.31 | -7.23 | 1.28 | -192 | -- | -396 | -0.0375 | 5.61 | 15 | 4447 | -- | -- |
| 103.31 | 0.473 | 12 | -1.5 | 1.3 | -2.16 | -- | -- | -0.102 | 5.33 | 18.7 | 5967 | -- | -- |
| 188.29 | 0.639 | 9.32 | -7.23 | -- | -192 | -- | -396 | -0.0139 | -- | 15 | 4401 | -- | -- |
| 136.01 | 0.547 | 12 | -0.837 | 1.29 | -- | 0.4 | -- | 0.135 | 5.63 | -- | -- | -- | -- |
| 136.37 | 0.547 | 12 | -0.835 | 1.29 | -- | -- | -- | 0.133 | 5.7 | -- | -- | -- | -- |
| 184.92 | 0.633 | 12.1 | -1.69 | -- | -2.27 | -- | -- | -0.129 | -- | 19.13 | 5627 | -- | -- |
| 143.05 | 0.557 | 12 | -- | 1.21 | -2.03 | -- | -- | 0.194 | 5.61 | 14.83 | 1499 | -- | -- |
| 223.11 | 0.698 | 12 | -0.794 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 154.74 | 0.582 | 12 | -- | 1.28 | -- | -- | -- | 0.226 | 5.73 | -- | -- | -- | -- |
| 225.59 | 0.7 | 12 | -- | -- | -2.37 | -- | -- | 0.219 | -- | 14.9 | 1428 | -- | -- |
| 239.74 | 0.723 | 12 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.51 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 2 | 91.52 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 5 | 92.21 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 20 |
| 6 | 92.38 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 19 |
| 9 | 92.68 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 12 | 92.85 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 18 | 93.01 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 20 | 93.05 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 25 | 93.15 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 27 | 93.18 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 29 | 93.21 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 34 | 93.26 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 42 | 93.34 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 43 | 93.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 44 | 93.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 49 | 93.40 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 54 | 93.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 55 | 93.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 76 | 93.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 77 | 93.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 93 | 93.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 94 | 93.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 6 |
| 99 | 94.02 | wind | 7.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 109 | 94.15 | wind | 7.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 112 | 94.20 | wind | 7.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 131 | 94.32 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 132 | 94.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 136 | 94.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 162 | 94.54 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 189 | 94.71 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 213 | 94.85 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 258 | 95.02 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 289 | 95.15 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 295 | 95.17 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 7 |
| 334 | 95.42 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 22 |
| 372 | 95.61 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 491 | 96.19 | wind | 7.0 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 492 | 96.19 | wind | 7.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 496 | 96.20 | wind | 7.0 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 503 | 96.22 | wind | 7.0 | 14400 | > th | dose independent | no | NA | NA |
| 518 | 96.25 | wind | 7.0 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 527 | 96.28 | wind | 7.0 | 14400 | < th | dose independent | no | NA | NA |
| 536 | 96.29 | wind | 7.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 573 | 96.37 | wind | 7.0 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 580 | 96.38 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 593 | 96.42 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 641 | 96.57 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 667 | 96.67 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 669 | 96.68 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 696 | 96.77 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 731 | 96.87 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 811 | 97.22 | wind | 7.0 | 14400 | > th | dose dependent | no | NA | NA |
| 812 | 97.22 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 820 | 97.25 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 823 | 97.26 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 830 | 97.28 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 835 | 97.30 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 872 | 97.36 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 879 | 97.39 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 887 | 97.42 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 923 | 97.48 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 13 |