FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0165800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0309) R2 : 0.121
β1 : 0.898 (0.113) R2dD : 0.126 R2D : 0.112
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0661) R2dN8 : 0.00886 R2N8 : -0.00431
σ : 0.581
deviance : 154.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.08 0.525 3 0.683 0.208 0.9 0.87 1.46 0.288 10.2 1.84 11397 -- --
128.23 0.527 2.99 0.943 0.211 0.867 0.876 -- 0.296 10.1 2.5 11313 -- --
127.59 0.526 2.99 0.659 0.192 0.886 -- 1.56 0.289 9.88 2.051 11313 -- --
131.24 0.534 2.96 1.01 0.196 0.826 -- -- 0.348 9.46 2.5 11362 -- --
128.37 0.528 3 0.651 -- 0.986 -- 1.63 0.299 -- 2.14 11193 -- --
144.72 0.564 3.02 0.862 0.303 -- 1.02 -- 0.121 10.6 -- -- -- --
149.04 0.572 3.02 0.903 0.299 -- -- -- 0.123 10.4 -- -- -- --
130.94 0.533 2.96 1.07 -- 0.851 -- -- 0.366 -- 2.549 14118 -- --
150.5 0.571 3 -- 0.203 0.818 -- -- 0.268 9.43 6.99 15568 -- --
154.51 0.581 3.03 0.898 -- -- -- -- 0.122 -- -- -- -- --
170.53 0.611 3.05 -- 0.295 -- -- -- 0.0228 10.2 -- -- -- --
152.7 0.576 3 -- -- 0.861 -- -- 0.259 -- 6.93 15416 -- --
175.79 0.619 3.05 -- -- -- -- -- 0.0227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.93 temperature 25.0 14400 > th dose independent rect. 23 1
2 123.95 temperature 25.0 14400 < th dose independent rect. 23 2
4 124.05 precipitation 0.1 43200 > th dose dependent rect. 2 16
6 124.13 precipitation 0.1 43200 > th dose dependent rect. 23 19
18 124.42 radiation 10.0 14400 < th dose independent rect. 15 15
23 124.45 radiation 10.0 14400 < th dose independent sin 14 NA
30 124.49 radiation 10.0 14400 < th dose independent rect. 15 4
32 124.49 radiation 10.0 14400 < th dose independent rect. 15 8
33 124.49 radiation 10.0 14400 < th dose independent rect. 15 10
44 124.52 radiation 40.0 14400 > th dose dependent rect. 13 20
54 124.60 radiation 40.0 14400 > th dose dependent rect. 13 2
74 124.61 precipitation 0.1 43200 > th dose dependent rect. 16 19
95 124.66 precipitation 0.1 43200 < th dose independent rect. 2 16
96 124.66 precipitation 0.1 43200 < th dose dependent rect. 2 16
105 124.67 precipitation 0.1 43200 > th dose independent rect. 2 16
127 124.70 precipitation 0.1 43200 > th dose dependent rect. 19 23
129 124.71 radiation 40.0 14400 < th dose independent rect. 13 20
140 124.73 radiation 10.0 14400 < th dose dependent rect. 13 18
151 124.74 precipitation 0.1 43200 > th dose dependent rect. 2 22
165 124.77 precipitation 0.1 43200 > th dose dependent sin 2 NA
174 124.79 radiation 40.0 14400 > th dose dependent sin 13 NA
187 124.82 radiation 10.0 14400 < th dose dependent rect. 13 12
198 124.83 radiation 10.0 14400 < th dose dependent rect. 13 6
207 124.84 radiation 40.0 14400 < th dose independent sin 13 NA
211 124.84 precipitation 0.1 43200 > th dose dependent no NA NA
224 124.86 precipitation 0.1 43200 < th dose independent rect. 16 16
225 124.86 precipitation 0.1 43200 < th dose dependent rect. 16 16
233 124.87 precipitation 0.1 43200 > th dose independent rect. 16 16
239 124.87 precipitation 0.1 43200 > th dose dependent rect. 5 23
256 124.89 radiation 20.0 14400 < th dose dependent sin 14 NA
257 124.90 radiation 1.0 14400 > th dose dependent rect. 17 14
279 124.92 radiation 10.0 14400 < th dose dependent rect. 16 15
303 124.94 temperature 30.0 14400 < th dose independent rect. 12 2
304 124.94 radiation 10.0 14400 > th dose independent rect. 15 2
314 124.95 wind 3.0 43200 > th dose dependent rect. 8 1
358 124.99 radiation 40.0 14400 < th dose independent rect. 13 4
359 124.99 radiation 10.0 14400 > th dose independent rect. 13 5
416 125.01 temperature 30.0 14400 > th dose independent rect. 12 2
417 125.01 temperature 25.0 14400 > th dose independent rect. 21 9
420 125.01 precipitation 0.1 43200 < th dose independent rect. 2 19
424 125.01 precipitation 0.1 43200 < th dose dependent rect. 2 19
435 125.02 precipitation 0.1 43200 > th dose independent rect. 2 19
439 125.02 precipitation 0.1 43200 > th dose dependent rect. 10 17
469 125.05 radiation 10.0 14400 > th dose independent sin 15 NA
471 125.05 precipitation 0.1 43200 > th dose dependent sin 11 NA
478 125.06 precipitation 0.1 43200 > th dose independent rect. 13 6
479 125.06 precipitation 0.1 43200 < th dose independent rect. 13 6
485 125.06 temperature 25.0 14400 > th dose dependent rect. 21 4
492 125.06 precipitation 0.1 43200 < th dose dependent rect. 13 6
534 125.08 precipitation 0.1 43200 > th dose independent rect. 11 8
543 125.08 temperature 30.0 43200 < th dose dependent rect. 10 1
567 125.09 wind 5.0 43200 < th dose independent rect. 24 13
575 125.09 radiation 1.0 14400 > th dose dependent rect. 13 17
580 125.10 wind 5.0 43200 > th dose independent rect. 24 13
596 125.11 radiation 1.0 14400 > th dose dependent sin 13 NA
620 125.12 radiation 1.0 14400 > th dose dependent rect. 13 6
649 125.13 wind 5.0 43200 < th dose independent rect. 5 4
657 125.13 wind 5.0 43200 > th dose independent rect. 3 9
674 125.13 precipitation 0.1 43200 > th dose dependent rect. 19 15
689 125.14 radiation 40.0 14400 < th dose dependent rect. 14 5
715 125.15 temperature 10.0 43200 > th dose dependent rect. 10 1
722 125.15 precipitation 0.1 43200 > th dose dependent rect. 19 13
733 125.16 precipitation 0.1 43200 > th dose independent rect. 23 19
734 125.16 precipitation 0.1 43200 < th dose independent rect. 23 19
765 125.16 precipitation 0.1 43200 < th dose dependent rect. 23 19
767 125.17 wind 5.0 43200 < th dose independent rect. 3 9
793 125.18 wind 5.0 43200 > th dose independent rect. 7 5
825 125.19 wind 5.0 43200 > th dose independent rect. 5 4
855 125.20 temperature 10.0 43200 > th dose dependent rect. 17 1
876 125.22 wind 5.0 43200 < th dose independent rect. 7 5
892 125.23 temperature 25.0 14400 < th dose independent rect. 5 1
953 125.25 wind 7.0 43200 < th dose dependent rect. 3 2