Os02g0165100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0165100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.4 | 0.528 | 8.54 | 0.607 | 1.63 | 3.32 | -3.58 | -5.83 | 0.366 | 19.6 | 1.79 | 787 | -- | -- |
| 139.57 | 0.55 | 8.56 | 0.654 | 2.14 | 3.96 | -0.328 | -- | 0.368 | 19.8 | 1.56 | 839 | -- | -- |
| 137.01 | 0.545 | 8.53 | 0.602 | 1.94 | 3.62 | -- | -1.05 | 0.351 | 19.3 | 0.82 | 786 | -- | -- |
| 138.11 | 0.547 | 8.57 | 0.592 | 1.93 | 3.67 | -- | -- | 0.31 | 19.3 | 0.8174 | 792 | -- | -- |
| 156.37 | 0.582 | 8.54 | 0.606 | -- | 1.81 | -- | 0.869 | 0.402 | -- | 0.5498 | 1940 | -- | -- |
| 159.79 | 0.593 | 8.55 | 0.302 | 0.986 | -- | -1.25 | -- | 0.171 | 3.8 | -- | -- | -- | -- |
| 164.21 | 0.6 | 8.54 | 0.321 | 0.987 | -- | -- | -- | 0.177 | 4.03 | -- | -- | -- | -- |
| 150.47 | 0.571 | 8.53 | 0.571 | -- | 1.75 | -- | -- | 0.325 | -- | 0.55 | 1938 | -- | -- |
| 147.38 | 0.565 | 8.57 | -- | 1.81 | 3.48 | -- | -- | 0.248 | 19.3 | 0.9763 | 785 | -- | -- |
| 217.28 | 0.689 | 8.54 | 0.361 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 166.92 | 0.604 | 8.55 | -- | 0.993 | -- | -- | -- | 0.142 | 4.03 | -- | -- | -- | -- |
| 158.22 | 0.586 | 8.54 | -- | -- | 1.7 | -- | -- | 0.263 | -- | 0.82 | 1943 | -- | -- |
| 220.72 | 0.693 | 8.55 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.92 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 4 | 125.80 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 14 | 125.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 17 | 126.05 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 22 | 126.56 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 42 | 127.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 45 | 127.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 48 | 127.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 9 |
| 49 | 127.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 59 | 127.85 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 11 |
| 62 | 127.90 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 9 |
| 100 | 128.66 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 11 |
| 106 | 128.74 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 109 | 128.81 | humidity | 70 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 111 | 128.85 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 13 |
| 133 | 129.21 | humidity | 70 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 152 | 129.53 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 177 | 129.85 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 197 | 129.96 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 202 | 130.00 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 17 |
| 204 | 130.00 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 20 |
| 206 | 130.00 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 251 | 130.37 | humidity | 80 | 720 | < th | dose independent | sin | 1 | NA |
| 273 | 130.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 297 | 130.77 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 307 | 130.87 | humidity | 80 | 720 | > th | dose independent | sin | 1 | NA |
| 308 | 130.87 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 18 |
| 317 | 130.94 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 326 | 131.01 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 335 | 131.08 | humidity | 70 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 367 | 131.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 446 | 131.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 448 | 131.75 | radiation | 1 | 270 | > th | dose independent | rect. | 16 | 23 |
| 457 | 131.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 458 | 131.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 467 | 131.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 468 | 131.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 477 | 131.90 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 564 | 132.38 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 591 | 132.39 | humidity | 70 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 594 | 132.40 | radiation | 20 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 612 | 132.51 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 701 | 132.69 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 790 | 133.14 | humidity | 70 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 795 | 133.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 873 | 133.39 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 882 | 133.43 | humidity | 80 | 270 | > th | dose dependent | no | NA | NA |
| 883 | 133.43 | humidity | 90 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 908 | 133.49 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 17 |
| 924 | 133.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 944 | 133.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 999 | 133.79 | humidity | 80 | 270 | > th | dose dependent | rect. | 19 | 23 |