Os02g0164800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0164800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.24 | 0.291 | 10.2 | -1.71 | 0.744 | -0.479 | -0.975 | 1.75 | -0.895 | 6.06 | 91.85 | 3282 | -- | -- |
| 40.67 | 0.297 | 10.2 | -1.57 | 0.734 | -0.312 | -0.822 | -- | -0.854 | 6.12 | 90 | 4960 | -- | -- |
| 40.32 | 0.296 | 10.2 | -1.69 | 0.737 | -0.461 | -- | 1.35 | -0.897 | 6.07 | 92.04 | 3247 | -- | -- |
| 42.13 | 0.302 | 10.2 | -1.55 | 0.74 | -0.368 | -- | -- | -0.867 | 6.15 | 90.49 | 4996 | -- | -- |
| 65.11 | 0.376 | 10.2 | -1.84 | -- | -0.345 | -- | 1.73 | -0.847 | -- | 92 | 5659 | -- | -- |
| 42.58 | 0.306 | 10.2 | -1.62 | 0.706 | -- | -0.823 | -- | -0.743 | 6 | -- | -- | -- | -- |
| 44.24 | 0.311 | 10.2 | -1.63 | 0.702 | -- | -- | -- | -0.739 | 6.03 | -- | -- | -- | -- |
| 54.79 | 0.345 | 10.2 | -1.63 | -- | 0.458 | -- | -- | -0.717 | -- | 80.96 | 402 | -- | -- |
| 101.24 | 0.469 | 10.2 | -- | 0.804 | -0.687 | -- | -- | -0.807 | 6.53 | 91.9 | 5079 | -- | -- |
| 69.76 | 0.39 | 10.2 | -1.61 | -- | -- | -- | -- | -0.723 | -- | -- | -- | -- | -- |
| 114 | 0.499 | 10.2 | -- | 0.678 | -- | -- | -- | -0.558 | 6.15 | -- | -- | -- | -- |
| 117.68 | 0.505 | 10.2 | -- | -- | 0.696 | -- | -- | -0.525 | -- | 72.5 | 572 | -- | -- |
| 137.83 | 0.548 | 10.2 | -- | -- | -- | -- | -- | -0.545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.49 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 16 | 37.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 21 | 38.01 | temperature | 25 | 30 | < th | dose dependent | sin | 11 | NA |
| 24 | 38.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 25 | 38.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 26 | 38.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 27 | 38.05 | humidity | 90 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 36 | 38.12 | humidity | 90 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 37 | 38.12 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 11 |
| 86 | 38.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 88 | 38.27 | humidity | 90 | 4320 | > th | dose dependent | rect. | 14 | 14 |
| 92 | 38.28 | humidity | 90 | 4320 | > th | dose dependent | rect. | 16 | 12 |
| 126 | 38.37 | humidity | 90 | 4320 | > th | dose dependent | sin | 13 | NA |
| 128 | 38.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 140 | 38.40 | humidity | 90 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 167 | 38.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 10 |
| 177 | 38.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 9 |
| 209 | 38.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 229 | 38.50 | humidity | 90 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 255 | 38.53 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 257 | 38.53 | humidity | 90 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 271 | 38.54 | humidity | 90 | 4320 | > th | dose dependent | rect. | 19 | 13 |
| 330 | 38.57 | humidity | 90 | 4320 | > th | dose dependent | rect. | 21 | 18 |
| 399 | 38.61 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 431 | 38.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 460 | 38.64 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 13 |
| 481 | 38.65 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 21 |
| 528 | 38.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 592 | 38.70 | humidity | 90 | 4320 | > th | dose dependent | no | NA | NA |
| 626 | 38.72 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 18 | 9 |
| 633 | 38.73 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 8 |
| 635 | 38.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 652 | 38.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 656 | 38.75 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 15 |
| 658 | 38.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 667 | 38.76 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 721 | 38.80 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 4 |
| 736 | 38.80 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 737 | 38.81 | humidity | 90 | 4320 | > th | dose independent | sin | 13 | NA |
| 760 | 38.82 | humidity | 90 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 847 | 38.86 | humidity | 90 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 853 | 38.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 5 |
| 866 | 38.87 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 4 |
| 887 | 38.88 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 908 | 38.89 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |