Os02g0164600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0164600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.36 | 0.283 | 8.48 | -1.27 | 0.62 | 0.958 | 0.65 | -0.357 | -0.27 | 18.2 | 20.41 | 1514 | -- | -- |
| 36.48 | 0.281 | 8.47 | -1.17 | 0.608 | 0.953 | 0.62 | -- | -0.241 | 18.2 | 20.3 | 1538 | -- | -- |
| 37.35 | 0.285 | 8.48 | -1.28 | 0.558 | 1.01 | -- | -0.332 | -0.263 | 18.2 | 20.42 | 1714 | -- | -- |
| 37.36 | 0.285 | 8.47 | -1.19 | 0.532 | 1.01 | -- | -- | -0.243 | 18.2 | 20.13 | 1804 | -- | -- |
| 40.19 | 0.295 | 8.45 | -1.11 | -- | 1.33 | -- | 0.158 | -0.245 | -- | 19.77 | 478 | -- | -- |
| 64.93 | 0.378 | 8.42 | -0.806 | 0.605 | -- | 0.607 | -- | -0.0145 | 18.4 | -- | -- | -- | -- |
| 65.85 | 0.38 | 8.42 | -0.814 | 0.608 | -- | -- | -- | -0.0125 | 18.4 | -- | -- | -- | -- |
| 40.11 | 0.295 | 8.46 | -1.14 | -- | 1.34 | -- | -- | -0.255 | -- | 19.95 | 478 | -- | -- |
| 69.98 | 0.39 | 8.42 | -- | 0.561 | 0.743 | -- | -- | -0.0506 | 17.6 | 21.76 | 1965 | -- | -- |
| 85.05 | 0.431 | 8.41 | -0.83 | -- | -- | -- | -- | -0.0254 | -- | -- | -- | -- | -- |
| 83.31 | 0.427 | 8.4 | -- | 0.619 | -- | -- | -- | 0.0782 | 18.3 | -- | -- | -- | -- |
| 71.75 | 0.395 | 8.42 | -- | -- | 1.06 | -- | -- | -0.0822 | -- | 21.2 | 429 | -- | -- |
| 103.21 | 0.474 | 8.39 | -- | -- | -- | -- | -- | 0.0667 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 7 | 35.05 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 37 | 36.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 94 | 36.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 95 | 36.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 106 | 36.40 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 110 | 36.41 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 111 | 36.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 142 | 36.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 180 | 36.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 305 | 36.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 358 | 36.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 447 | 36.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 480 | 36.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 550 | 36.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 572 | 37.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 583 | 37.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 606 | 37.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 637 | 37.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 679 | 37.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 739 | 37.14 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 740 | 37.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 784 | 37.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 800 | 37.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 815 | 37.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 838 | 37.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 924 | 37.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 973 | 37.31 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 974 | 37.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 988 | 37.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 998 | 37.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |