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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0163500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.63 (0.106) R2 : 0.659
β1 : 0.311 (0.316) R2dD : 0.00128 R2D : -0.0114
β2 : 0.891 (0.173) R2dC : 0.0267 R2C : -0.00887
β3 : -8.68 (1.2) R2dE : 0.807 R2E : -1.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -27.1 (2.89) R2dD*E : 1.27 R2D*E : -0.459
γ1 : 3.24 (0.143) R2dN8 : 0.587 R2N8 : 0.416
σ : 1.17
deviance : 632.65
__
_____
C
peak time of C : 22.7
E
wheather : radiation
threshold : 40
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
624.47 1.17 8.64 0.374 0.905 -8.75 1.55 -27.3 3.22 22.6 40 4321 17 15
752.67 1.29 7.8 0.179 1.38 -1.08 -0.667 -- 3.62 23.8 40 4321 17 15
632.65 1.17 8.63 0.311 0.891 -8.68 -- -27.1 3.24 22.7 40 4321 17 15
752.68 1.28 7.81 0.198 1.51 -1.19 -- -- 3.63 23.8 113.3 4325 17 15
662.41 1.2 8.66 0.312 -- -8.5 -- -27 3.22 -- 40 4320 17 15
777.03 1.31 7.78 0.182 0.379 -- 1.94 -- 3.65 17.7 -- -- -- --
783.67 1.31 7.78 0.165 0.443 -- -- -- 3.65 19.5 -- -- -- --
770.9 1.29 7.72 0.391 -- -0.583 -- -- 3.8 -- 131.5 985 13.2 18.8
749.65 1.28 7.81 -- 1.45 -1.15 -- -- 3.65 23.6 114.2 4340 16.8 15.8
794.16 1.32 7.77 0.158 -- -- -- -- 3.65 -- -- -- -- --
784.39 1.31 7.78 -- 0.441 -- -- -- 3.64 19.6 -- -- -- --
761.5 1.29 7.76 -- -- -0.581 -- -- 3.72 -- 159.1 1111 10.1 21.8
794.82 1.32 7.77 -- -- -- -- -- 3.63 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 605.61 wind 7 43200 > th dose dependent rect. 10 1
2 608.14 wind 9 43200 > th dose independent rect. 10 1
3 609.56 wind 7 43200 > th dose dependent rect. 7 6
7 611.55 wind 7 43200 > th dose dependent rect. 23 15
9 611.83 wind 7 43200 > th dose dependent rect. 4 10
10 611.98 wind 7 43200 > th dose dependent rect. 2 12
16 612.54 wind 9 43200 > th dose independent rect. 9 3
17 612.81 wind 9 43200 < th dose independent rect. 10 1
20 612.92 wind 9 43200 > th dose independent rect. 8 5
24 613.58 wind 9 43200 < th dose independent rect. 8 5
25 613.68 wind 9 43200 < th dose independent rect. 5 8
33 614.61 wind 9 43200 > th dose independent rect. 20 17
36 615.04 wind 7 43200 > th dose dependent sin 6 NA
40 615.36 wind 9 43200 < th dose independent sin 6 NA
45 615.90 wind 9 43200 < th dose independent rect. 20 18
52 616.25 wind 9 43200 < th dose independent rect. 23 15
59 616.76 wind 9 43200 < th dose independent rect. 1 13
72 617.27 wind 9 43200 > th dose independent sin 6 NA
94 618.25 wind 9 43200 > th dose independent rect. 24 13
118 620.27 wind 9 43200 > th dose dependent rect. 20 22
139 621.19 wind 3 43200 > th dose independent rect. 22 7
150 621.70 wind 3 43200 < th dose independent rect. 21 8
180 623.13 wind 9 43200 > th dose dependent rect. 4 14
182 623.16 wind 1 43200 > th dose dependent rect. 24 11
189 623.26 wind 9 43200 > th dose dependent rect. 8 10
192 623.33 wind 7 43200 < th dose dependent rect. 24 4
202 623.47 wind 3 43200 > th dose independent rect. 22 13
223 623.82 wind 3 43200 > th dose dependent rect. 23 15
244 624.26 wind 3 43200 > th dose dependent sin 6 NA
275 624.73 wind 9 43200 > th dose dependent rect. 8 23
278 624.74 wind 9 43200 > th dose dependent rect. 4 18
282 624.78 wind 9 43200 > th dose dependent rect. 1 21
291 624.84 wind 9 43200 > th dose dependent rect. 4 22
303 624.89 wind 9 43200 > th dose dependent no NA NA
310 624.91 wind 9 43200 > th dose dependent rect. 10 23
327 625.15 wind 9 43200 < th dose dependent rect. 24 11
332 625.20 wind 3 43200 < th dose independent rect. 21 12
342 625.29 wind 3 43200 > th dose independent rect. 2 2
372 625.52 wind 9 43200 > th dose dependent rect. 12 23
375 625.55 wind 1 43200 > th dose dependent rect. 24 4
379 625.58 wind 9 43200 > th dose dependent rect. 8 18
414 625.75 wind 9 43200 > th dose dependent sin 0 NA
434 625.90 wind 1 43200 > th dose dependent rect. 8 3
463 626.12 wind 1 43200 > th dose dependent rect. 10 1
504 626.52 wind 3 43200 > th dose dependent rect. 6 2
627 627.58 wind 1 43200 > th dose dependent rect. 21 8
654 627.85 wind 1 43200 > th dose dependent rect. 23 6
717 628.49 wind 9 43200 < th dose dependent rect. 10 1
836 629.35 wind 3 43200 > th dose independent sin 8 NA
875 629.71 wind 1 43200 > th dose dependent rect. 2 1
879 629.75 wind 9 43200 < th dose dependent rect. 21 8
898 629.94 wind 9 43200 < th dose dependent rect. 8 3
943 630.36 wind 9 43200 < th dose dependent rect. 6 5
948 630.40 wind 9 43200 < th dose independent rect. 20 13
950 630.41 wind 9 43200 > th dose independent rect. 20 13
959 630.53 wind 5 43200 < th dose independent rect. 6 1
998 630.82 wind 3 43200 < th dose independent rect. 4 1