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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0163400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.61 (0.121) R2 : 0.607
β1 : -0.947 (0.456) R2dD : 0.0134 R2D : 0.0418
β2 : 1 (0.163) R2dC : 0.033 R2C : -0.00492
β3 : 9.07 (1.17) R2dE : 0.924 R2E : -0.904
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 29.1 (3.11) R2dD*E : 1.12 R2D*E : -0.593
γ1 : 2.44 (0.169) R2dN8 : 0.337 R2N8 : 0.106
σ : 1.25
deviance : 720.75
__
_____
C
peak time of C : 21.8
E
wheather : radiation
threshold : 0.9552
memory length : 3594
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
723.49 1.26 6.57 -0.725 1 9.19 0.308 28.7 2.54 21.7 0.9544 3594 18 11
866.76 1.38 5.62 -2.87 0.812 2.44 0.665 -- 2.56 21.4 -0.547 4430 18.5 11.1
720.75 1.25 6.61 -0.947 1 9.07 -- 29.1 2.44 21.8 0.9552 3594 18 11.2
868.33 1.38 5.62 -2.9 0.81 2.47 -- -- 2.56 21.2 -0.547 4430 18.5 11.1
773.17 1.3 6.63 -0.786 -- 9.41 -- 30.1 2.43 -- 0.759 3699 18 11.2
885.09 1.39 5.63 -2.84 1.11 -- 0.68 -- 2.54 22.5 -- -- -- --
886.98 1.39 5.63 -2.86 1.1 -- -- -- 2.54 22.5 -- -- -- --
837.49 1.35 5.54 -1.31 -- 2.19 -- -- 2.79 -- -3.369 11715 17.4 11
766.39 1.29 5.57 -- 1.12 3.67 -- -- 2.77 22.2 -0.3494 46129 18 10.3
961.58 1.45 5.6 -2.85 -- -- -- -- 2.55 -- -- -- -- --
1103.28 1.55 5.56 -- 1.09 -- -- -- 2.86 22.3 -- -- -- --
790.7 1.31 5.61 -- -- 3.69 -- -- 2.76 -- -3.41 46183 18 10.2
1175.21 1.6 5.53 -- -- -- -- -- 2.86 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 727.03 wind 5.0 43200 > th dose dependent rect. 6 1
3 728.24 radiation 1.0 14400 > th dose dependent rect. 18 11
4 729.36 wind 5.0 43200 > th dose independent rect. 6 1
6 729.75 wind 5.0 43200 < th dose independent rect. 6 1
7 730.41 wind 9.0 43200 > th dose dependent rect. 20 11
12 730.84 radiation 1.0 14400 > th dose dependent rect. 18 1
26 732.04 wind 9.0 43200 > th dose dependent rect. 20 7
31 733.12 wind 9.0 43200 > th dose dependent rect. 20 4
35 733.58 wind 9.0 43200 > th dose independent rect. 19 12
38 734.13 wind 9.0 43200 < th dose independent rect. 19 13
57 736.79 wind 9.0 43200 > th dose independent rect. 19 8
75 738.29 wind 9.0 14400 > th dose dependent rect. 10 1
76 738.32 wind 9.0 43200 < th dose independent rect. 19 8
79 738.49 humidity 70.0 14400 < th dose dependent rect. 18 14
80 738.58 wind 9.0 43200 > th dose dependent sin 13 NA
83 738.83 wind 9.0 43200 > th dose independent rect. 20 5
90 739.09 wind 9.0 43200 > th dose dependent rect. 17 15
97 739.23 wind 1.0 43200 > th dose dependent sin 5 NA
100 739.33 wind 1.0 43200 > th dose dependent rect. 24 10
104 739.47 wind 7.0 43200 > th dose dependent rect. 14 21
106 739.62 wind 9.0 43200 > th dose independent sin 11 NA
109 739.62 humidity 70.0 14400 < th dose dependent rect. 18 3
110 739.68 wind 1.0 43200 > th dose dependent rect. 24 15
124 739.80 wind 7.0 43200 > th dose dependent rect. 17 20
132 739.94 radiation 10.0 14400 < th dose independent rect. 17 13
139 740.06 wind 9.0 43200 < th dose independent sin 11 NA
143 740.09 wind 9.0 43200 > th dose independent rect. 14 21
144 740.10 wind 9.0 43200 < th dose independent rect. 14 21
157 740.34 wind 9.0 43200 < th dose dependent sin 5 NA
167 740.48 wind 9.0 43200 < th dose dependent rect. 24 15
177 740.60 wind 9.0 43200 < th dose independent rect. 17 21
181 740.67 wind 9.0 43200 < th dose dependent rect. 24 10
201 740.78 precipitation 0.1 43200 > th dose dependent rect. 3 5
222 741.00 wind 9.0 43200 < th dose independent rect. 20 5
237 741.13 wind 7.0 43200 > th dose dependent sin 11 NA
253 741.24 wind 9.0 43200 < th dose independent rect. 19 19
268 741.36 precipitation 0.1 43200 > th dose independent rect. 3 5
295 741.56 precipitation 0.1 43200 < th dose independent rect. 3 5
296 741.56 precipitation 0.1 43200 < th dose dependent rect. 3 5
300 741.60 wind 9.0 43200 < th dose dependent rect. 4 6
314 741.68 wind 3.0 43200 < th dose dependent rect. 3 2
315 741.68 temperature 10.0 14400 > th dose dependent rect. 17 2
320 741.70 wind 9.0 43200 < th dose independent rect. 17 16
328 741.75 wind 9.0 43200 < th dose dependent rect. 6 3
330 741.76 humidity 90.0 14400 < th dose independent rect. 21 1
335 741.77 wind 9.0 43200 > th dose independent rect. 17 20
351 741.85 wind 3.0 43200 > th dose independent rect. 3 7
393 742.11 humidity 80.0 14400 < th dose independent rect. 14 5
420 742.21 humidity 90.0 14400 < th dose independent rect. 16 10
426 742.22 wind 3.0 43200 < th dose independent rect. 3 7
427 742.22 humidity 80.0 14400 < th dose independent rect. 12 8
431 742.23 temperature 30.0 14400 < th dose dependent rect. 18 1
488 742.45 wind 9.0 43200 < th dose dependent rect. 4 9
506 742.54 humidity 80.0 14400 > th dose independent rect. 12 8
533 742.66 wind 1.0 43200 > th dose dependent rect. 20 14
534 742.67 wind 3.0 43200 > th dose dependent rect. 9 1
542 742.69 precipitation 0.1 43200 > th dose dependent rect. 6 3
544 742.70 precipitation 0.1 43200 > th dose independent rect. 6 3
556 742.75 wind 9.0 43200 > th dose dependent sin 18 NA
563 742.78 humidity 80.0 14400 > th dose dependent rect. 18 1
578 742.85 wind 9.0 14400 > th dose dependent rect. 6 5
629 743.05 wind 3.0 43200 > th dose independent rect. 3 11
635 743.07 wind 1.0 43200 > th dose dependent rect. 18 19
638 743.08 humidity 80.0 14400 > th dose independent rect. 15 4
650 743.12 wind 9.0 43200 > th dose independent rect. 19 20
682 743.23 wind 3.0 43200 > th dose dependent rect. 18 22
696 743.26 wind 3.0 43200 < th dose dependent rect. 1 4
701 743.29 humidity 90.0 43200 < th dose independent rect. 7 3
724 743.35 wind 9.0 43200 > th dose independent rect. 19 17
745 743.42 precipitation 0.1 43200 < th dose independent rect. 6 3
748 743.42 precipitation 0.1 43200 < th dose dependent rect. 6 3
778 743.49 wind 7.0 43200 > th dose dependent rect. 23 22
794 743.55 wind 3.0 43200 < th dose independent rect. 3 10
799 743.57 wind 5.0 43200 < th dose independent rect. 15 19
820 743.65 wind 9.0 43200 < th dose dependent rect. 20 14
896 743.85 wind 9.0 43200 > th dose dependent rect. 10 21
924 743.94 wind 5.0 43200 > th dose independent rect. 15 19
943 743.98 wind 7.0 43200 > th dose dependent rect. 1 23
952 744.00 wind 7.0 43200 > th dose dependent rect. 6 23
954 744.02 wind 7.0 43200 > th dose dependent no NA NA
961 744.04 wind 9.0 43200 > th dose independent rect. 23 22
983 744.08 wind 9.0 43200 > th dose independent rect. 19 23
991 744.09 wind 7.0 43200 > th dose dependent rect. 4 23