Os02g0162700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0162700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.31 | 0.353 | 10.7 | -0.149 | 0.481 | -1.05 | -0.916 | -1.91 | 0.064 | 5.43 | 23.24 | 1337 | -- | -- |
| 59.39 | 0.359 | 10.7 | -0.391 | 0.491 | -0.725 | -0.729 | -- | 0.0192 | 5.63 | 23.63 | 1084 | -- | -- |
| 58.26 | 0.355 | 10.7 | -0.167 | 0.473 | -1.04 | -- | -1.73 | 0.0597 | 5.65 | 23.18 | 1352 | -- | -- |
| 60.7 | 0.363 | 10.7 | -0.411 | 0.49 | -0.761 | -- | -- | 0.0171 | 6.06 | 23.49 | 1086 | -- | -- |
| 70.02 | 0.39 | 10.7 | -0.184 | -- | -1.11 | -- | -1.74 | 0.0642 | -- | 23.2 | 1289 | -- | -- |
| 66.2 | 0.381 | 10.7 | -0.195 | 0.505 | -- | -0.866 | -- | 0.148 | 5.34 | -- | -- | -- | -- |
| 68.02 | 0.386 | 10.7 | -0.196 | 0.501 | -- | -- | -- | 0.152 | 5.56 | -- | -- | -- | -- |
| 72.78 | 0.397 | 10.7 | -0.406 | -- | -0.764 | -- | -- | 0.00245 | -- | 25 | 1200 | -- | -- |
| 64.49 | 0.374 | 10.7 | -- | 0.487 | -0.531 | -- | -- | 0.0922 | 5.98 | 23.8 | 1030 | -- | -- |
| 81.08 | 0.421 | 10.7 | -0.179 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 69.03 | 0.389 | 10.6 | -- | 0.498 | -- | -- | -- | 0.174 | 5.58 | -- | -- | -- | -- |
| 76.53 | 0.407 | 10.7 | -- | -- | -0.566 | -- | -- | 0.0819 | -- | 25.1 | 1181 | -- | -- |
| 81.93 | 0.422 | 10.7 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 5 | 53.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 7 | 53.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 14 | 53.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 75 | 54.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 81 | 54.17 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 84 | 54.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 109 | 54.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 146 | 54.50 | temperature | 25 | 1440 | < th | dose independent | sin | 11 | NA |
| 177 | 54.63 | temperature | 25 | 1440 | > th | dose independent | sin | 12 | NA |
| 275 | 55.05 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 280 | 55.07 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 285 | 55.09 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 307 | 55.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 325 | 55.22 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 341 | 55.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 342 | 55.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 419 | 55.51 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 501 | 55.72 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 517 | 55.76 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 536 | 55.80 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 540 | 55.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 546 | 55.82 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 616 | 55.97 | radiation | 40 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 634 | 56.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 635 | 56.02 | radiation | 40 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 645 | 56.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 666 | 56.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 671 | 56.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 688 | 56.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 695 | 56.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 696 | 56.13 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 699 | 56.14 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 709 | 56.16 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 740 | 56.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 744 | 56.19 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 783 | 56.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 786 | 56.25 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 805 | 56.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 867 | 56.37 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 873 | 56.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 898 | 56.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |