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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0162600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.31 (0.0557) R2 : 0.697
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.7 (0.133) R2dC : 0.508 R2C : 0.552
β3 : -3.13 (0.232) R2dE : 0.125 R2E : 0.168
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.547 (0.117) R2dN8 : 0.0237 R2N8 : 0.0169
σ : 1.05
deviance : 498.98
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_____
C
peak time of C : 12.2
E
wheather : radiation
threshold : 11.68
memory length : 15
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 17.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
498.18 1.05 5.33 -0.195 3.66 -3.24 -0.119 1.62 -0.659 12.2 11.68 15 17.8 --
497.21 1.05 5.31 -0.239 3.69 -3.13 -0.199 -- -0.573 12.2 11.68 15 17.8 --
495.25 1.04 5.31 -0.216 3.7 -3.14 -- 1.25 -0.57 12.2 11.68 15 17.8 --
497.38 1.05 5.31 -0.247 3.7 -3.13 -- -- -0.574 12.2 11.68 15 17.8 --
1223.6 1.63 5.52 -0.196 -- -3.94 -- 0.76 -0.771 -- 3.31 132 16.5 --
707.48 1.25 5.31 -0.248 3.83 -- 0.0786 -- -0.602 11.9 -- -- -- --
707.51 1.25 5.31 -0.245 3.83 -- -- -- -0.602 11.9 -- -- -- --
1192.99 1.61 5.42 -0.607 -- -5.15 -- -- -0.768 -- 2.618 131 17.5 --
498.98 1.05 5.31 -- 3.7 -3.13 -- -- -0.547 12.2 11.68 15 17.8 --
1631.7 1.89 5.39 -0.362 -- -- -- -- -0.653 -- -- -- -- --
709.09 1.25 5.3 -- 3.83 -- -- -- -0.574 11.9 -- -- -- --
1202.58 1.62 5.4 -- -- -5.1 -- -- -0.7 -- 2.709 131 17.5 --
1635.16 1.89 5.38 -- -- -- -- -- -0.613 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 499.76 radiation 10 10 < th dose dependent sin 0 NA
3 505.26 humidity 60 10 > th dose dependent rect. 3 17
5 508.36 radiation 10 10 > th dose independent rect. 9 23
11 513.10 humidity 80 10 < th dose independent rect. 22 18
13 514.56 radiation 20 10 < th dose dependent rect. 12 23
16 515.21 humidity 70 10 > th dose dependent sin 2 NA
19 515.96 radiation 20 10 < th dose dependent rect. 3 23
20 516.11 humidity 90 10 < th dose dependent rect. 22 18
21 516.42 humidity 70 10 > th dose dependent rect. 3 15
30 518.64 humidity 90 10 < th dose dependent rect. 20 20
31 518.74 radiation 20 10 < th dose dependent rect. 15 23
32 518.89 radiation 20 10 < th dose dependent no NA NA
41 521.11 radiation 30 30 < th dose dependent rect. 3 17
70 524.50 humidity 70 270 > th dose dependent rect. 24 17
72 525.08 radiation 20 10 < th dose dependent rect. 3 19
76 525.36 radiation 10 10 < th dose independent rect. 3 17
82 525.84 radiation 10 10 < th dose independent rect. 3 19
121 530.14 humidity 80 270 > th dose independent rect. 24 17
146 532.03 radiation 20 10 < th dose dependent rect. 9 23
149 532.22 humidity 80 10 > th dose independent rect. 3 17
153 532.53 humidity 80 30 > th dose independent rect. 3 15
164 533.14 radiation 10 10 > th dose independent rect. 17 23
230 537.29 radiation 10 10 > th dose independent sin 23 NA
237 537.60 humidity 60 10 > th dose dependent rect. 1 19
248 538.45 humidity 80 30 > th dose independent rect. 3 13
263 539.33 radiation 10 10 < th dose independent rect. 3 23
268 539.54 temperature 20 270 > th dose independent rect. 24 9
271 539.78 radiation 10 10 < th dose independent rect. 13 22
284 540.33 humidity 60 270 > th dose dependent rect. 24 10
286 540.37 radiation 20 10 < th dose dependent rect. 23 23
290 540.54 temperature 20 270 > th dose independent rect. 1 18
306 541.16 temperature 10 270 > th dose dependent rect. 24 9
312 541.42 radiation 10 10 > th dose independent no NA NA
313 541.42 humidity 80 270 > th dose independent rect. 24 9
314 541.42 radiation 10 10 > th dose independent rect. 6 12
397 541.73 radiation 10 10 < th dose independent sin 23 NA
444 542.79 humidity 90 10 < th dose dependent sin 3 NA
530 546.52 radiation 10 10 < th dose independent rect. 1 21
534 546.70 radiation 10 10 < th dose independent rect. 15 23
550 547.18 radiation 10 10 < th dose independent no NA NA
554 547.40 radiation 10 10 < th dose independent rect. 9 23
556 547.42 radiation 20 10 < th dose dependent rect. 1 23
561 547.61 temperature 20 270 > th dose independent rect. 14 17
565 547.77 humidity 60 10 > th dose dependent rect. 3 9
570 547.95 radiation 10 10 > th dose independent rect. 11 23
583 548.33 radiation 10 30 > th dose independent rect. 7 9
634 549.33 radiation 10 10 > th dose independent rect. 15 23
682 550.43 radiation 20 10 < th dose dependent rect. 1 21
728 551.97 radiation 10 10 > th dose independent rect. 9 9
773 552.84 humidity 80 10 < th dose independent rect. 9 7
813 553.79 humidity 80 10 < th dose independent sin 2 NA
857 554.90 humidity 80 30 > th dose independent sin 2 NA
898 555.89 radiation 10 10 < th dose independent rect. 7 23
929 556.43 radiation 10 30 > th dose independent rect. 9 7
932 556.48 radiation 30 30 < th dose dependent rect. 3 11
978 557.42 radiation 20 90 < th dose dependent rect. 3 14
982 557.51 radiation 20 10 < th dose dependent rect. 8 12
983 557.52 humidity 80 10 > th dose independent rect. 1 19