Os02g0162000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0162000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.74 | 0.192 | 11.8 | 0.194 | 0.249 | 0.146 | -0.161 | -0.896 | 0.198 | 2.66 | 19.8 | 1307 | -- | -- |
| 17.19 | 0.193 | 11.7 | 0.313 | 0.261 | 0.317 | -0.223 | -- | 0.237 | 2.82 | 18.5 | 2636 | -- | -- |
| 16.8 | 0.191 | 11.8 | 0.204 | 0.244 | 0.154 | -- | -0.872 | 0.201 | 2.75 | 19.65 | 1173 | -- | -- |
| 16.98 | 0.192 | 11.8 | 0.221 | 0.241 | 0.469 | -- | -- | 0.194 | 2.61 | 18.5 | 2640 | -- | -- |
| 19.99 | 0.208 | 11.8 | 0.196 | -- | 0.187 | -- | -0.817 | 0.195 | -- | 20.6 | 1064 | -- | -- |
| 19.77 | 0.208 | 11.7 | 0.435 | 0.261 | -- | -0.278 | -- | 0.28 | 2.69 | -- | -- | -- | -- |
| 20.04 | 0.21 | 11.7 | 0.442 | 0.26 | -- | -- | -- | 0.282 | 2.65 | -- | -- | -- | -- |
| 20.04 | 0.208 | 11.8 | 0.215 | -- | 0.536 | -- | -- | 0.195 | -- | 18.31 | 2563 | -- | -- |
| 17.95 | 0.197 | 11.8 | -- | 0.232 | 0.61 | -- | -- | 0.157 | 2.61 | 18.47 | 2666 | -- | -- |
| 23.99 | 0.229 | 11.7 | 0.453 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 25.19 | 0.235 | 11.8 | -- | 0.269 | -- | -- | -- | 0.232 | 2.67 | -- | -- | -- | -- |
| 20.92 | 0.213 | 11.8 | -- | -- | 0.647 | -- | -- | 0.149 | -- | 18.5 | 2588 | -- | -- |
| 29.41 | 0.253 | 11.8 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 2 | 16.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 3 | 16.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 10 | 16.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 11 | 16.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 14 | 16.57 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 15 | 16.57 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 25 | 16.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 34 | 16.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 36 | 16.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 66 | 16.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 90 | 16.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 98 | 16.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 282 | 16.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 283 | 16.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 294 | 16.82 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 306 | 16.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 312 | 16.83 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 333 | 16.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 355 | 16.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 390 | 16.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 392 | 16.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 396 | 16.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 422 | 16.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 488 | 16.90 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 737 | 17.01 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 21 |
| 794 | 17.03 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 821 | 17.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 865 | 17.05 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 867 | 17.05 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 956 | 17.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 15 |