Os02g0161700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0161700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Leucine rich repeat, N-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 358.18 | 0.889 | 3.17 | 0.704 | 0.438 | 4.98 | 1.74 | -3.95 | 3.18 | 1.15 | 9.515 | 14 | 11 | 0.762 |
| 360.02 | 0.884 | 3.17 | 0.705 | 0.439 | 4.36 | 1.79 | -- | 3.18 | 1.15 | 9.251 | 13 | 11 | 0.769 |
| 370.01 | 0.896 | 3.18 | 0.646 | 0.442 | 4.99 | -- | -4.73 | 3.18 | 0.203 | 9.655 | 13 | 11 | 0.81 |
| 372.65 | 0.899 | 3.18 | 0.646 | 0.443 | 4.24 | -- | -- | 3.17 | 0.205 | 9.348 | 13 | 11 | 0.767 |
| 382.23 | 0.911 | 3.17 | 0.664 | -- | 4.76 | -- | -4.7 | 3.18 | -- | 9.483 | 13 | 11 | 0.817 |
| 397.39 | 0.935 | 3.17 | 0.746 | 0.368 | -- | 1.67 | -- | 3.16 | 1.35 | -- | -- | -- | -- |
| 408.04 | 0.946 | 3.18 | 0.691 | 0.377 | -- | -- | -- | 3.16 | 0.201 | -- | -- | -- | -- |
| 384.89 | 0.914 | 3.17 | 0.67 | -- | 4.04 | -- | -- | 3.18 | -- | 9.258 | 13 | 11 | 0.767 |
| 383.61 | 0.912 | 3.2 | -- | 0.453 | 4.33 | -- | -- | 3.1 | 0.282 | 9.781 | 13 | 11 | 0.825 |
| 417.01 | 0.954 | 3.17 | 0.703 | -- | -- | -- | -- | 3.16 | -- | -- | -- | -- | -- |
| 420.61 | 0.959 | 3.2 | -- | 0.387 | -- | -- | -- | 3.08 | 0.298 | -- | -- | -- | -- |
| 396.43 | 0.927 | 3.19 | -- | -- | 4.11 | -- | -- | 3.11 | -- | 9.536 | 13 | 11 | 0.9 |
| 430.04 | 0.968 | 3.19 | -- | -- | -- | -- | -- | 3.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.87 | radiation | 10 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 3 | 364.64 | radiation | 10 | 10 | < th | dose independent | rect. | 11 | 1 |
| 5 | 365.29 | wind | 5 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 9 | 365.68 | wind | 5 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 15 | 367.15 | wind | 3 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 16 | 367.15 | wind | 1 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 17 | 367.69 | wind | 1 | 90 | < th | dose dependent | rect. | 10 | 8 |
| 21 | 367.77 | wind | 1 | 90 | < th | dose independent | rect. | 10 | 13 |
| 24 | 368.02 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 26 | 368.12 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 30 | 368.24 | wind | 3 | 720 | < th | dose independent | rect. | 10 | 9 |
| 32 | 368.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 35 | 368.45 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 36 | 368.49 | humidity | 80 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 38 | 368.58 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 5 |
| 39 | 368.58 | wind | 5 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 45 | 368.77 | wind | 5 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 49 | 368.86 | wind | 5 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 58 | 369.01 | wind | 3 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 59 | 369.03 | wind | 5 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 73 | 369.23 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 76 | 369.29 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 87 | 369.44 | wind | 5 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 95 | 369.51 | wind | 7 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 119 | 369.73 | wind | 5 | 1440 | > th | dose independent | sin | 0 | NA |
| 142 | 369.92 | wind | 5 | 1440 | < th | dose independent | sin | 0 | NA |
| 146 | 369.95 | wind | 3 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 151 | 369.98 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 199 | 370.32 | wind | 7 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 212 | 370.40 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 216 | 370.43 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 232 | 370.50 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 240 | 370.54 | wind | 5 | 720 | < th | dose dependent | sin | 22 | NA |
| 287 | 370.74 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 296 | 370.78 | wind | 7 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 299 | 370.80 | wind | 3 | 1440 | > th | dose dependent | sin | 23 | NA |
| 403 | 371.17 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 478 | 371.46 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 20 | NA |
| 531 | 371.62 | wind | 7 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 586 | 371.85 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 599 | 371.89 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 20 | NA |
| 607 | 371.91 | wind | 7 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 675 | 372.11 | wind | 7 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 742 | 372.27 | wind | 7 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 823 | 372.50 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 858 | 372.57 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 890 | 372.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 912 | 372.68 | wind | 1 | 90 | < th | dose independent | rect. | 10 | 8 |