Os02g0161400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0161400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.45 | 0.218 | 12.4 | -0.249 | 0.438 | 0.552 | -0.00966 | -0.482 | 0.194 | 20.1 | 25.93 | 30 | -- | -- |
| 21.78 | 0.217 | 12.5 | -0.319 | 0.453 | 0.601 | -0.0795 | -- | 0.184 | 20 | 25.8 | 49 | -- | -- |
| 21.45 | 0.216 | 12.4 | -0.249 | 0.438 | 0.552 | -- | -0.482 | 0.194 | 20.1 | 25.93 | 30 | -- | -- |
| 21.78 | 0.217 | 12.5 | -0.325 | 0.451 | 0.592 | -- | -- | 0.181 | 20.1 | 25.8 | 53 | -- | -- |
| 31.44 | 0.263 | 12.4 | -0.25 | -- | 0.625 | -- | -0.429 | 0.191 | -- | 25.1 | 16 | -- | -- |
| 26.88 | 0.243 | 12.5 | -0.465 | 0.463 | -- | -0.0682 | -- | 0.0522 | 21.2 | -- | -- | -- | -- |
| 26.9 | 0.243 | 12.5 | -0.463 | 0.463 | -- | -- | -- | 0.0522 | 21.2 | -- | -- | -- | -- |
| 31.7 | 0.263 | 12.4 | -0.313 | -- | 0.659 | -- | -- | 0.177 | -- | 25.06 | 9 | -- | -- |
| 24.4 | 0.23 | 12.4 | -- | 0.493 | 0.66 | -- | -- | 0.206 | 19.9 | 25.83 | 76 | -- | -- |
| 39.32 | 0.293 | 12.5 | -0.462 | -- | -- | -- | -- | 0.0499 | -- | -- | -- | -- | -- |
| 32.55 | 0.267 | 12.5 | -- | 0.463 | -- | -- | -- | 0.104 | 21.1 | -- | -- | -- | -- |
| 34.09 | 0.273 | 12.4 | -- | -- | 0.766 | -- | -- | 0.224 | -- | 24.8 | 7 | -- | -- |
| 44.94 | 0.313 | 12.5 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.76 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 10 |
| 4 | 19.90 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 12 | 20.03 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 15 |
| 29 | 20.23 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 35 | 20.32 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 19 |
| 61 | 20.60 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 19 |
| 157 | 21.19 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 164 | 21.23 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 166 | 21.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 184 | 21.30 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 197 | 21.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 201 | 21.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 211 | 21.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 219 | 21.38 | temperature | 20 | 90 | > th | dose dependent | sin | 11 | NA |
| 258 | 21.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 310 | 21.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 314 | 21.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 317 | 21.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 325 | 21.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 330 | 21.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 342 | 21.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 345 | 21.68 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 361 | 21.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 363 | 21.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 381 | 21.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 395 | 21.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 397 | 21.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 398 | 21.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 500 | 21.84 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 16 |
| 533 | 21.89 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 534 | 21.89 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 23 |
| 537 | 21.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 565 | 21.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 602 | 21.96 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 22 |
| 612 | 21.97 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 645 | 22.00 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 669 | 22.02 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 778 | 22.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 21 |
| 822 | 22.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 890 | 22.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 917 | 22.24 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 23 |