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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0161100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Actin-binding FH2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0533) R2 : 0.578
β1 : 0.931 (0.204) R2dD : 0.0219 R2D : -0.157
β2 : 1.52 (0.125) R2dC : 0.14 R2C : 0.0141
β3 : -1.45 (0.19) R2dE : 0.0686 R2E : -0.137
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.47 (0.117) R2dN8 : 0.595 R2N8 : 0.364
σ : 0.989
deviance : 450.99
__
_____
C
peak time of C : 0.164
E
wheather : wind
threshold : 4.748
memory length : 5753
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.1
open length of G : 0.981

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
453.03 1 4.06 0.491 1.57 -1.67 1.02 -1.31 2.42 0.285 4.912 4325 19.9 0.853
455.05 0.994 4.06 0.581 1.57 -1.69 1.06 -- 2.43 0.288 5 4325 19.9 0.85
450.33 0.988 4.04 0.579 1.58 -1.41 -- -1.25 2.48 0.257 4.713 5752 20.1 0.983
450.99 0.989 4.04 0.931 1.52 -1.45 -- -- 2.47 0.164 4.748 5753 20.1 0.981
595.24 1.14 4.04 0.812 -- -1.42 -- -1.2 2.47 -- 4.6 5736 20.1 1.02
511.06 1.06 4.09 0.474 1.56 -- 0.977 -- 2.25 0.373 -- -- -- --
515.16 1.06 4.1 0.437 1.55 -- -- -- 2.24 0.326 -- -- -- --
596.85 1.14 4.04 1.06 -- -1.61 -- -- 2.47 -- 4.654 5743 20.1 1.02
468.83 1.01 4.04 -- 1.53 -1.43 -- -- 2.47 0.14 5.001 5763 20.1 0.806
667.02 1.21 4.07 0.489 -- -- -- -- 2.27 -- -- -- -- --
520.19 1.07 4.11 -- 1.56 -- -- -- 2.19 0.341 -- -- -- --
620.36 1.16 4.04 -- -- -1.39 -- -- 2.44 -- 5.098 5744 20.1 0.817
673.32 1.21 4.08 -- -- -- -- -- 2.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 458.55 wind 5.0 14400 > th dose independent rect. 15 22
2 458.63 wind 5.0 14400 > th dose independent rect. 18 22
3 458.68 temperature 20.0 720 > th dose dependent rect. 21 12
5 458.86 wind 5.0 4320 < th dose independent rect. 20 1
7 458.92 wind 5.0 14400 < th dose independent rect. 19 21
9 458.94 wind 5.0 14400 < th dose independent rect. 15 22
11 459.05 wind 5.0 4320 > th dose independent rect. 20 1
22 459.42 wind 3.0 4320 > th dose dependent rect. 20 1
26 459.57 wind 5.0 14400 > th dose independent rect. 10 23
33 459.79 wind 5.0 14400 > th dose independent rect. 7 23
36 459.89 wind 5.0 14400 > th dose independent no NA NA
37 459.90 wind 5.0 14400 > th dose independent rect. 23 23
45 460.09 wind 5.0 14400 > th dose independent rect. 4 23
46 460.10 temperature 25.0 1440 < th dose independent rect. 19 2
51 460.16 wind 5.0 14400 > th dose independent rect. 2 23
55 460.26 temperature 25.0 1440 > th dose dependent rect. 18 1
65 460.42 wind 5.0 14400 < th dose independent rect. 10 23
67 460.47 temperature 20.0 720 > th dose dependent rect. 23 9
70 460.55 wind 5.0 14400 < th dose independent rect. 7 23
72 460.59 atmosphere 1005.0 30 > th dose dependent rect. 6 3
80 460.69 wind 5.0 14400 < th dose independent no NA NA
83 460.72 wind 5.0 14400 < th dose independent rect. 23 23
90 460.91 wind 5.0 14400 < th dose independent rect. 5 23
96 461.02 wind 5.0 14400 < th dose independent rect. 2 23
137 461.67 temperature 30.0 14400 < th dose independent rect. 15 1
145 461.80 temperature 25.0 1440 > th dose independent rect. 19 1
180 462.24 humidity 70.0 1440 > th dose independent rect. 18 1
187 462.35 temperature 30.0 14400 > th dose independent rect. 15 1
233 463.24 wind 5.0 4320 > th dose dependent rect. 20 5
268 463.76 temperature 25.0 10 > th dose independent rect. 5 6
277 463.98 wind 5.0 14400 > th dose independent rect. 15 18
302 464.29 wind 5.0 14400 > th dose independent sin 13 NA
319 464.46 wind 9.0 43200 > th dose dependent rect. 18 3
328 464.60 wind 5.0 43200 > th dose dependent rect. 14 1
332 464.69 wind 9.0 43200 > th dose independent rect. 18 3
343 464.83 wind 5.0 14400 > th dose independent rect. 15 15
357 465.04 wind 9.0 43200 < th dose independent rect. 18 3
362 465.13 temperature 20.0 720 > th dose dependent sin 9 NA
364 465.16 radiation 20.0 10 < th dose independent rect. 6 3
374 465.34 wind 5.0 14400 < th dose independent rect. 15 18
384 465.47 wind 7.0 43200 < th dose independent rect. 14 1
387 465.54 wind 5.0 14400 > th dose independent sin 1 NA
400 465.81 wind 5.0 14400 < th dose independent sin 13 NA
427 466.10 wind 5.0 14400 < th dose independent sin 2 NA
447 466.35 wind 7.0 43200 > th dose independent rect. 14 1
455 466.47 wind 5.0 4320 > th dose independent rect. 20 5
466 466.57 temperature 25.0 270 > th dose independent rect. 6 2
484 466.84 wind 5.0 14400 < th dose independent rect. 15 15
494 466.94 radiation 1.0 30 > th dose independent rect. 18 15
509 467.13 wind 5.0 4320 < th dose independent rect. 20 5
523 467.30 wind 5.0 14400 > th dose independent rect. 4 12
527 467.34 wind 7.0 43200 < th dose independent rect. 13 8
539 467.45 wind 5.0 43200 > th dose dependent rect. 13 8
553 467.64 temperature 20.0 720 > th dose dependent rect. 3 4
564 467.70 wind 5.0 14400 < th dose independent rect. 4 12
581 467.85 temperature 25.0 1440 > th dose dependent rect. 15 13
598 467.97 radiation 1.0 30 > th dose independent rect. 5 4
610 467.99 temperature 15.0 30 > th dose dependent rect. 6 3
622 468.12 wind 5.0 14400 > th dose dependent rect. 16 23
639 468.31 wind 7.0 43200 > th dose independent rect. 13 8
641 468.31 temperature 10.0 720 > th dose dependent rect. 19 14
657 468.47 wind 5.0 14400 > th dose dependent rect. 14 23
679 468.62 humidity 80.0 1440 < th dose dependent rect. 18 1
683 468.67 wind 5.0 14400 > th dose dependent rect. 11 22
690 468.75 wind 5.0 43200 > th dose dependent rect. 13 5
706 468.90 temperature 30.0 1440 < th dose dependent rect. 18 1
709 468.93 temperature 30.0 14400 < th dose independent rect. 14 16
712 468.93 wind 5.0 14400 > th dose dependent rect. 24 22
713 468.94 temperature 30.0 14400 < th dose independent rect. 14 14
718 468.96 temperature 30.0 14400 < th dose independent rect. 14 6
719 468.96 temperature 30.0 14400 < th dose independent rect. 14 8
720 468.96 temperature 30.0 14400 < th dose independent rect. 14 10
761 469.20 precipitation 0.1 14400 < th dose independent rect. 20 1
764 469.20 precipitation 0.1 14400 < th dose dependent rect. 20 1
792 469.25 wind 5.0 14400 > th dose dependent rect. 2 23
794 469.26 wind 5.0 14400 > th dose dependent rect. 8 23
802 469.30 wind 5.0 14400 > th dose dependent no NA NA
803 469.30 wind 9.0 4320 < th dose dependent rect. 20 1
815 469.35 precipitation 0.1 14400 > th dose independent rect. 20 1
827 469.43 atmosphere 1000.0 30 > th dose independent rect. 9 21
828 469.43 wind 9.0 43200 > th dose dependent rect. 18 12
833 469.47 wind 5.0 14400 > th dose dependent rect. 19 23
837 469.49 wind 5.0 14400 > th dose dependent rect. 2 20
866 469.62 wind 7.0 30 < th dose dependent rect. 6 3
911 469.77 wind 5.0 30 < th dose independent rect. 6 3
953 469.92 wind 9.0 10 < th dose independent rect. 9 21
981 470.05 atmosphere 1005.0 30 > th dose independent rect. 6 3
986 470.09 radiation 40.0 30 < th dose independent rect. 6 3
990 470.10 temperature 30.0 1440 < th dose independent rect. 15 1
993 470.12 radiation 20.0 43200 < th dose independent rect. 7 1