Os02g0160900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0160900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.5 | 0.597 | 12.2 | 0.649 | 2.32 | -1.35 | 0.33 | 4.51 | -2.39 | 11 | 10.6 | 4551 | -- | -- |
| 170.5 | 0.608 | 12.1 | 0.217 | 2.3 | -1.64 | 0.52 | -- | -2.46 | 10.9 | 10.7 | 4584 | -- | -- |
| 160.27 | 0.59 | 12.2 | 0.73 | 2.34 | -1.4 | -- | 4.96 | -2.32 | 11 | 10.79 | 4567 | -- | -- |
| 171.03 | 0.609 | 12.1 | 0.226 | 2.34 | -1.7 | -- | -- | -2.39 | 11 | 10.7 | 4620 | -- | -- |
| 456.17 | 0.995 | 12.3 | 0.708 | -- | -0.246 | -- | 4.67 | -2.83 | -- | 11.1 | 4620 | -- | -- |
| 244.2 | 0.733 | 12.3 | 0.255 | 1.94 | -- | 0.883 | -- | -3.11 | 10.6 | -- | -- | -- | -- |
| 247.41 | 0.737 | 12.3 | 0.291 | 1.93 | -- | -- | -- | -3.1 | 10.6 | -- | -- | -- | -- |
| 460.82 | 1 | 12.4 | -0.631 | -- | -1.69 | -- | -- | -3.11 | -- | 3.444 | 5039 | -- | -- |
| 172.4 | 0.612 | 12.1 | -- | 2.34 | -1.71 | -- | -- | -2.41 | 11 | 10.7 | 4620 | -- | -- |
| 476.88 | 1.02 | 12.3 | 0.255 | -- | -- | -- | -- | -3.11 | -- | -- | -- | -- | -- |
| 249.65 | 0.739 | 12.3 | -- | 1.93 | -- | -- | -- | -3.13 | 10.6 | -- | -- | -- | -- |
| 434.75 | 0.971 | 12.3 | -- | -- | -2.1 | -- | -- | -2.99 | -- | 1.699 | 2198 | -- | -- |
| 478.6 | 1.02 | 12.3 | -- | -- | -- | -- | -- | -3.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.47 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 196.46 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 3 | 198.55 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 4 | 200.93 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 5 | 201.08 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 14 |
| 6 | 201.61 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 8 | 202.81 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 11 | 203.37 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 12 | 204.08 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 18 | 206.50 | temperature | 25 | 30 | > th | dose dependent | rect. | 18 | 13 |
| 20 | 207.16 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 22 | 207.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 26 | 208.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 41 | 209.11 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 8 |
| 44 | 209.15 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 17 | 4 |
| 46 | 209.25 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 54 | 209.43 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 17 | 14 |
| 58 | 209.73 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 71 | 210.32 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 14 |
| 85 | 210.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 87 | 210.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 124 | 211.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 138 | 211.92 | temperature | 25 | 30 | > th | dose dependent | rect. | 18 | 8 |
| 145 | 211.98 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 16 | 8 |
| 146 | 212.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 151 | 212.09 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 11 |
| 169 | 212.37 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 15 | 8 |
| 174 | 212.47 | temperature | 25 | 90 | > th | dose independent | sin | 12 | NA |
| 176 | 212.52 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 189 | 212.70 | wind | 3 | 720 | > th | dose independent | rect. | 2 | 2 |
| 255 | 213.37 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 280 | 213.58 | wind | 3 | 720 | < th | dose independent | rect. | 2 | 1 |
| 290 | 213.73 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 304 | 213.87 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 11 |
| 339 | 214.23 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 351 | 214.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 454 | 215.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 482 | 215.40 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 505 | 215.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 510 | 215.69 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 553 | 216.02 | wind | 9 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 561 | 216.08 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 12 | NA |
| 583 | 216.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 20 |
| 593 | 216.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 11 |
| 626 | 216.55 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 5 |
| 647 | 216.72 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 654 | 216.77 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 719 | 217.24 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 736 | 217.40 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 749 | 217.53 | atmosphere | 1005 | 270 | > th | dose independent | sin | 14 | NA |
| 757 | 217.59 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 1 |
| 758 | 217.59 | wind | 9 | 4320 | > th | dose dependent | sin | 1 | NA |
| 778 | 217.71 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 788 | 217.77 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 18 | 5 |
| 791 | 217.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 803 | 217.89 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 811 | 217.99 | wind | 9 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 827 | 218.04 | atmosphere | 1005 | 270 | < th | dose independent | sin | 13 | NA |
| 828 | 218.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 22 |
| 831 | 218.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 844 | 218.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 861 | 218.16 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 18 | 13 |
| 863 | 218.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 864 | 218.18 | temperature | 25 | 30 | > th | dose dependent | rect. | 18 | 5 |
| 877 | 218.22 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 8 |
| 894 | 218.29 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 906 | 218.35 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 934 | 218.46 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 1 |
| 958 | 218.56 | wind | 9 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 987 | 218.67 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 991 | 218.70 | wind | 9 | 4320 | < th | dose independent | rect. | 23 | 17 |