Os02g0160600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0160600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.95 | 0.613 | 9.3 | 1.3 | 2.72 | -1.33 | 0.283 | 0.234 | 0.23 | 9.23 | 20.4 | 293 | 17.8 | 17 |
| 169.95 | 0.607 | 9.31 | 1.26 | 2.7 | -1.35 | 0.315 | -- | 0.217 | 9.2 | 20.4 | 296 | 17.7 | 16.9 |
| 169.99 | 0.607 | 9.3 | 1.32 | 2.7 | -1.34 | -- | 0.248 | 0.232 | 9.21 | 20.43 | 305 | 17.6 | 17 |
| 170.15 | 0.608 | 9.31 | 1.29 | 2.67 | -1.37 | -- | -- | 0.228 | 9.16 | 20.4 | 319 | 17.6 | 16.9 |
| 236.66 | 0.716 | 9.31 | 1.17 | -- | -2.14 | -- | 0.703 | -0.211 | -- | 18.91 | 224 | 16.2 | 9.53 |
| 238.5 | 0.724 | 9.37 | 0.979 | 2.4 | -- | 0.163 | -- | 0.0167 | 10.6 | -- | -- | -- | -- |
| 238.61 | 0.723 | 9.37 | 0.986 | 2.4 | -- | -- | -- | 0.0172 | 10.6 | -- | -- | -- | -- |
| 216.99 | 0.686 | 9.47 | 1.1 | -- | -2.12 | -- | -- | -0.0389 | -- | 17.3 | 253 | 16.3 | 9 |
| 211.59 | 0.677 | 9.33 | -- | 2.64 | -1.14 | -- | -- | 0.0688 | 9.29 | 20.5 | 280 | 17.9 | 16.8 |
| 593.62 | 1.14 | 9.43 | 0.941 | -- | -- | -- | -- | 0.00512 | -- | -- | -- | -- | -- |
| 264.23 | 0.76 | 9.39 | -- | 2.39 | -- | -- | -- | -0.0926 | 10.6 | -- | -- | -- | -- |
| 244.06 | 0.728 | 9.45 | -- | -- | -2.16 | -- | -- | -0.0418 | -- | 17.22 | 251 | 16.5 | 8.74 |
| 616.96 | 1.16 | 9.46 | -- | -- | -- | -- | -- | -0.0992 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 3 | 172.68 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 17 |
| 10 | 175.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 12 | 175.69 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 22 | 177.66 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 18 |
| 26 | 177.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 50 | 181.40 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 7 |
| 59 | 181.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 70 | 182.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 99 | 184.48 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 112 | 185.49 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 19 |
| 143 | 187.07 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 7 |
| 191 | 188.73 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 9 |
| 198 | 188.93 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 216 | 189.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 239 | 189.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 265 | 190.58 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 269 | 190.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 284 | 190.90 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 19 |
| 290 | 191.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 332 | 192.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 512 | 194.71 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 21 |
| 608 | 196.38 | temperature | 30 | 90 | < th | dose independent | rect. | 1 | 17 |
| 651 | 196.98 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 684 | 197.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 783 | 198.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 787 | 198.66 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 790 | 198.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 806 | 198.82 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 827 | 199.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 833 | 199.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 881 | 199.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 927 | 199.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 936 | 200.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 940 | 200.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 949 | 200.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 979 | 200.31 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 7 |