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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0160300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.78 (0.044) R2 : 0.774
β1 : 1.29 (0.161) R2dD : 0.0333 R2D : 0.0304
β2 : 3 (0.132) R2dC : 0.361 R2C : 0.587
β3 : 1.49 (0.107) R2dE : 0.137 R2E : 0.383
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.338 (0.0956) R2dN8 : 0.00872 R2N8 : 0.00679
σ : 0.82
deviance : 310.31
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_____
C
peak time of C : 20
E
wheather : wind
threshold : 7.499
memory length : 55
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 19.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.94 0.824 5.78 1.32 2.97 1.48 1.35 -0.612 0.348 20 8.176 59 12.1 19.3
308.94 0.819 5.78 1.33 3.01 1.46 0.879 -- 0.343 20 7.819 55 12.1 19.4
310.31 0.82 5.78 1.29 3 1.49 -- 0.012 0.338 20 7.5 55 12.1 19.3
310.31 0.82 5.78 1.29 3 1.49 -- -- 0.338 20 7.499 55 12.1 19.3
386.52 0.916 5.53 1.53 -- 3.31 -- 0.147 0.691 -- 27.58 308 11.5 14.1
385.31 0.92 5.75 1.45 4.01 -- 0.833 -- 0.587 20.9 -- -- -- --
387.67 0.922 5.75 1.42 4.01 -- -- -- 0.586 20.9 -- -- -- --
381.76 0.91 5.64 1.4 -- 3.38 -- -- 0.569 -- 39.94 316 11.5 13.9
352.73 0.875 5.81 -- 3.04 1.49 -- -- 0.246 20 6.701 45 12 19.5
1305.07 1.69 5.65 1.42 -- -- -- -- 0.559 -- -- -- -- --
440.57 0.982 5.79 -- 4 -- -- -- 0.428 20.9 -- -- -- --
433.25 0.969 5.68 -- -- 3.39 -- -- 0.413 -- 41.26 322 11.5 13.9
1358.08 1.72 5.68 -- -- -- -- -- 0.401 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.50 wind 9.0 90 < th dose independent rect. 12 19
3 313.15 humidity 50.0 90 > th dose independent rect. 7 5
4 313.36 radiation 1.0 90 > th dose independent rect. 7 5
5 313.80 precipitation 0.1 90 < th dose independent rect. 7 5
6 313.80 precipitation 0.1 90 < th dose dependent rect. 7 5
7 313.81 temperature 10.0 90 > th dose independent rect. 7 5
8 313.81 atmosphere 995.0 90 > th dose independent rect. 7 5
9 313.81 atmosphere 1015.0 90 < th dose independent rect. 7 5
10 313.81 temperature 10.0 90 > th dose independent rect. 12 19
13 314.70 wind 1.0 30 > th dose independent rect. 12 19
15 315.00 temperature 10.0 1440 > th dose independent rect. 8 5
18 315.00 atmosphere 995.0 1440 > th dose independent rect. 8 5
19 315.00 temperature 10.0 1440 > th dose independent rect. 13 19
23 315.49 wind 7.0 270 < th dose independent rect. 10 21
24 315.98 temperature 30.0 270 < th dose dependent rect. 7 3
26 316.14 wind 9.0 90 < th dose independent rect. 7 5
29 316.25 temperature 10.0 30 > th dose dependent rect. 12 8
39 317.03 wind 1.0 90 > th dose independent rect. 7 5
40 317.06 humidity 50.0 270 > th dose dependent rect. 7 3
41 317.14 precipitation 0.1 90 < th dose independent rect. 12 19
42 317.14 precipitation 0.1 90 < th dose dependent rect. 12 19
44 317.28 temperature 30.0 270 < th dose independent rect. 7 3
46 317.46 temperature 30.0 90 < th dose independent rect. 7 5
47 317.95 temperature 20.0 30 > th dose independent rect. 20 16
48 318.25 temperature 10.0 270 > th dose dependent rect. 17 8
51 318.61 wind 7.0 30 < th dose independent rect. 12 21
59 319.12 humidity 50.0 270 > th dose dependent rect. 8 1
66 319.37 humidity 60.0 270 > th dose independent rect. 7 3
67 319.60 humidity 50.0 30 > th dose independent rect. 9 3
68 319.64 wind 1.0 30 > th dose independent rect. 9 3
79 320.19 temperature 10.0 1440 > th dose independent rect. 10 3
82 320.19 atmosphere 995.0 1440 > th dose independent rect. 10 3
83 320.19 temperature 10.0 1440 > th dose independent rect. 13 21
88 320.30 temperature 10.0 270 > th dose independent rect. 7 3
89 320.30 atmosphere 995.0 270 > th dose independent rect. 7 3
90 320.30 atmosphere 1015.0 270 < th dose independent rect. 7 3
91 320.30 temperature 10.0 270 > th dose independent rect. 10 21
93 320.45 precipitation 0.1 270 < th dose independent rect. 7 3
94 320.45 precipitation 0.1 270 < th dose dependent rect. 7 3
95 320.48 wind 9.0 270 < th dose independent rect. 7 3
97 320.53 temperature 10.0 30 > th dose independent rect. 9 3
99 320.53 atmosphere 995.0 30 > th dose independent rect. 9 3
100 320.53 atmosphere 1015.0 30 < th dose independent rect. 9 3
101 320.53 precipitation 0.1 30 < th dose independent rect. 9 3
103 320.53 temperature 10.0 30 > th dose independent rect. 12 21
104 320.53 precipitation 0.1 30 < th dose dependent rect. 9 3
105 320.58 radiation 1.0 30 > th dose independent rect. 9 3
106 320.59 atmosphere 1015.0 10 < th dose dependent rect. 12 8
107 320.61 radiation 40.0 270 < th dose independent rect. 7 3
111 320.82 temperature 30.0 270 < th dose dependent rect. 22 8
141 321.69 atmosphere 995.0 90 > th dose independent rect. 12 19
148 321.82 temperature 10.0 270 > th dose dependent rect. 2 14
160 322.30 wind 9.0 30 < th dose independent rect. 9 3
191 322.66 radiation 40.0 270 < th dose dependent rect. 7 3
195 322.80 wind 7.0 90 < th dose independent rect. 12 7
199 322.99 humidity 90.0 30 < th dose independent rect. 7 5
200 323.03 temperature 10.0 270 > th dose dependent rect. 10 7
202 323.14 precipitation 0.1 30 < th dose independent rect. 12 21
203 323.14 precipitation 0.1 30 < th dose dependent rect. 12 21
225 324.08 wind 7.0 270 < th dose independent rect. 1 15
238 324.44 wind 1.0 270 > th dose independent rect. 10 21
245 324.66 precipitation 0.1 270 < th dose independent rect. 10 21
246 324.66 precipitation 0.1 270 < th dose dependent rect. 10 21
251 324.75 wind 1.0 30 > th dose dependent rect. 9 3
253 324.77 temperature 10.0 30 > th dose dependent rect. 20 16
277 325.14 humidity 50.0 30 > th dose independent rect. 12 19
289 325.44 atmosphere 1015.0 30 < th dose independent rect. 20 16
292 325.59 humidity 50.0 30 > th dose independent rect. 20 16
297 325.71 temperature 25.0 270 > th dose independent rect. 18 7
314 326.00 wind 9.0 90 < th dose dependent rect. 12 7
316 326.11 precipitation 0.1 90 < th dose independent rect. 19 17
317 326.11 precipitation 0.1 90 < th dose dependent rect. 19 17
331 326.51 temperature 25.0 90 > th dose independent rect. 12 6
334 326.54 atmosphere 1010.0 30 < th dose independent rect. 12 8
336 326.58 wind 7.0 270 < th dose independent rect. 10 8
349 326.66 temperature 10.0 1440 > th dose independent rect. 13 8
352 326.66 temperature 10.0 1440 > th dose independent rect. 21 16
355 326.66 atmosphere 995.0 1440 > th dose independent rect. 21 16
358 326.74 temperature 10.0 30 > th dose independent rect. 12 8
362 326.74 atmosphere 995.0 30 > th dose independent rect. 20 16
406 327.41 precipitation 0.1 10 < th dose independent rect. 12 8
408 327.41 precipitation 0.1 10 < th dose dependent rect. 12 8
422 327.52 atmosphere 995.0 30 > th dose independent rect. 12 21
423 327.54 humidity 50.0 30 > th dose dependent rect. 9 3
437 327.82 radiation 1.0 90 > th dose independent rect. 12 18
449 327.93 temperature 15.0 270 > th dose dependent rect. 12 3
458 327.96 radiation 1.0 270 > th dose independent rect. 17 19
469 328.10 wind 1.0 270 > th dose independent rect. 8 1
473 328.15 temperature 20.0 10 > th dose dependent rect. 20 7
493 328.40 atmosphere 1015.0 90 < th dose independent rect. 12 19
498 328.45 wind 9.0 30 < th dose independent rect. 20 16
550 329.12 humidity 50.0 30 > th dose independent rect. 12 21
561 329.24 humidity 90.0 30 < th dose independent rect. 9 3
614 329.90 temperature 25.0 270 > th dose independent rect. 10 7
616 329.92 radiation 1.0 270 > th dose independent rect. 4 8
681 330.46 radiation 40.0 270 < th dose dependent rect. 21 10
683 330.47 temperature 10.0 1440 > th dose independent rect. 13 6
687 330.47 temperature 10.0 1440 > th dose independent rect. 19 18
690 330.47 atmosphere 995.0 1440 > th dose independent rect. 19 18
691 330.48 wind 7.0 270 < th dose independent rect. 12 4
713 330.64 atmosphere 1015.0 270 < th dose independent rect. 7 14
729 330.98 temperature 15.0 270 > th dose independent rect. 16 9
736 331.07 radiation 20.0 270 < th dose independent rect. 21 10
752 331.23 wind 1.0 10 > th dose independent rect. 12 8
753 331.26 wind 9.0 270 < th dose dependent rect. 12 3
776 331.41 wind 1.0 90 > th dose independent rect. 12 7
784 331.43 humidity 70.0 270 > th dose independent rect. 21 10
790 331.51 wind 7.0 270 < th dose independent rect. 21 10
797 331.59 precipitation 0.1 270 < th dose independent rect. 7 14
799 331.59 precipitation 0.1 270 < th dose dependent rect. 7 14
818 331.78 temperature 30.0 90 < th dose independent rect. 19 17
832 332.00 atmosphere 995.0 30 > th dose dependent rect. 9 3
835 332.06 temperature 10.0 270 > th dose independent rect. 21 10
836 332.06 temperature 30.0 270 < th dose independent rect. 21 10
837 332.06 humidity 50.0 270 > th dose independent rect. 21 10
839 332.06 atmosphere 995.0 270 > th dose independent rect. 21 10
841 332.06 temperature 10.0 270 > th dose independent rect. 7 14
890 332.45 temperature 30.0 270 < th dose independent rect. 16 20
902 332.57 radiation 1.0 90 > th dose independent rect. 12 7
916 332.59 atmosphere 1015.0 30 < th dose independent rect. 12 21
922 332.65 radiation 40.0 270 < th dose independent rect. 7 16
923 332.65 wind 9.0 90 < th dose dependent rect. 12 19
924 332.66 atmosphere 995.0 270 > th dose independent rect. 15 21
932 332.70 precipitation 0.1 1440 < th dose independent rect. 10 3
934 332.70 precipitation 0.1 1440 < th dose dependent rect. 10 3
937 332.74 temperature 25.0 270 > th dose independent rect. 12 3
980 333.13 atmosphere 995.0 270 > th dose independent rect. 7 14