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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0160100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0154) R2 : 0.00728
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0592 (0.0323) R2dN8 : 0.0094 R2N8 : 0.00728
σ : 0.289
deviance : 38.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.62 0.288 2.82 -0.0963 0.0547 0.0671 -0.204 -0.77 0.011 5.4 11.77 5542 -- --
38.01 0.287 2.81 0.0364 0.0448 0.0817 -0.207 -- 0.0402 5.68 29.88 8591 -- --
37.72 0.286 2.82 -0.0965 0.0545 0.0663 -- -0.763 0.0109 5.4 11.76 5551 -- --
38.09 0.287 2.81 0.0293 0.0455 0.088 -- -- 0.0371 5.39 30 8599 -- --
37.86 0.287 2.82 -0.0947 -- 0.0654 -- -0.752 0.0109 -- 11.77 5570 -- --
38.19 0.29 2.81 0.00485 0.0499 -- -0.204 -- 0.0577 4.55 -- -- -- --
38.3 0.29 2.81 0.00631 0.0495 -- -- -- 0.0588 5.06 -- -- -- --
38.2 0.288 2.81 0.0294 -- 0.0873 -- -- 0.0387 -- 30 8599 -- --
38.1 0.287 2.81 -- 0.0473 0.0878 -- -- 0.0366 5.25 29.88 8820 -- --
38.43 0.29 2.81 0.00809 -- -- -- -- 0.06 -- -- -- -- --
38.3 0.29 2.81 -- 0.0496 -- -- -- 0.0581 5.05 -- -- -- --
38.23 0.288 2.81 -- -- 0.0829 -- -- 0.0393 -- 29.99 8599 -- --
38.43 0.289 2.81 -- -- -- -- -- 0.0592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.23 humidity 90.0 90 < th dose independent rect. 2 1
2 36.31 atmosphere 1005.0 30 > th dose independent rect. 2 2
5 36.40 temperature 20.0 90 > th dose independent rect. 2 1
6 36.55 atmosphere 1000.0 90 > th dose dependent rect. 2 1
15 36.72 humidity 80.0 90 > th dose independent rect. 2 1
17 36.77 wind 5.0 90 < th dose independent rect. 2 1
18 36.80 wind 1.0 90 > th dose independent rect. 2 1
23 36.86 humidity 90.0 10 > th dose independent rect. 2 3
24 36.86 temperature 10.0 90 > th dose dependent rect. 2 1
26 36.87 temperature 10.0 90 > th dose independent rect. 2 1
28 36.87 temperature 30.0 90 < th dose independent rect. 2 1
29 36.87 humidity 50.0 90 > th dose independent rect. 2 1
32 36.87 atmosphere 995.0 90 > th dose independent rect. 2 1
34 36.87 atmosphere 1010.0 90 < th dose independent rect. 2 1
36 36.87 radiation 1.0 90 < th dose independent rect. 2 1
41 36.87 precipitation 0.1 90 < th dose independent rect. 2 1
43 36.87 temperature 10.0 90 > th dose independent rect. 3 23
44 36.87 radiation 1.0 90 < th dose dependent rect. 2 1
49 36.87 precipitation 0.1 90 < th dose dependent rect. 2 1
50 36.88 temperature 30.0 90 < th dose independent rect. 3 23
51 36.88 atmosphere 995.0 90 > th dose independent rect. 3 23
54 36.92 precipitation 0.1 90 < th dose independent rect. 3 23
55 36.92 wind 9.0 90 < th dose dependent rect. 2 1
58 36.92 precipitation 0.1 90 < th dose dependent rect. 3 23
59 36.93 humidity 50.0 90 > th dose dependent rect. 2 1
68 37.00 humidity 50.0 90 > th dose independent rect. 3 23
79 37.05 wind 9.0 90 < th dose independent rect. 3 23
83 37.07 temperature 30.0 90 < th dose dependent rect. 2 1
90 37.09 wind 9.0 1440 < th dose independent rect. 3 2
93 37.09 temperature 10.0 1440 > th dose independent rect. 3 2
97 37.09 temperature 30.0 1440 < th dose independent rect. 3 2
104 37.09 humidity 50.0 1440 > th dose independent rect. 3 2
115 37.09 atmosphere 995.0 1440 > th dose independent rect. 3 2
123 37.09 radiation 20.0 1440 < th dose independent rect. 3 2
137 37.09 temperature 10.0 1440 > th dose independent rect. 5 22
181 37.12 temperature 20.0 10 < th dose independent rect. 4 1
190 37.14 temperature 30.0 90 > th dose dependent rect. 10 1
192 37.17 humidity 50.0 10 > th dose dependent rect. 2 2
198 37.19 wind 3.0 270 > th dose independent rect. 24 1
201 37.20 radiation 10.0 30 < th dose dependent rect. 4 22
205 37.22 humidity 50.0 30 > th dose independent rect. 15 11
209 37.24 radiation 40.0 10 < th dose dependent rect. 15 11
211 37.25 wind 1.0 10 > th dose independent rect. 4 22
219 37.26 atmosphere 1015.0 90 < th dose dependent rect. 2 1
220 37.26 radiation 20.0 10 < th dose dependent rect. 15 11
230 37.27 radiation 1.0 14400 < th dose dependent rect. 3 1
274 37.28 radiation 1.0 1440 < th dose independent rect. 3 1
296 37.28 atmosphere 1015.0 30 < th dose independent rect. 4 22
310 37.28 radiation 1.0 1440 < th dose dependent rect. 3 1
330 37.29 radiation 10.0 10 < th dose independent rect. 15 11
342 37.31 humidity 90.0 270 < th dose dependent rect. 24 1
350 37.32 radiation 10.0 30 < th dose independent rect. 4 22
354 37.33 temperature 30.0 90 > th dose independent rect. 10 1
356 37.33 humidity 90.0 270 < th dose independent rect. 24 3
370 37.34 temperature 30.0 30 < th dose independent rect. 15 11
371 37.34 radiation 40.0 30 < th dose independent rect. 15 11
379 37.35 wind 9.0 30 < th dose independent rect. 15 11
390 37.36 atmosphere 1000.0 30 > th dose independent rect. 2 13
403 37.37 temperature 10.0 1440 > th dose independent rect. 16 11
409 37.37 precipitation 0.1 30 < th dose independent rect. 15 11
411 37.37 temperature 10.0 1440 > th dose independent rect. 3 13
414 37.37 precipitation 0.1 30 < th dose independent rect. 2 13
418 37.37 precipitation 0.1 30 < th dose dependent rect. 15 11
419 37.37 precipitation 0.1 30 < th dose dependent rect. 2 13
422 37.38 temperature 10.0 30 > th dose independent rect. 15 11
423 37.38 atmosphere 995.0 30 > th dose independent rect. 15 11
427 37.38 temperature 10.0 30 > th dose independent rect. 2 13
431 37.38 atmosphere 1015.0 30 < th dose independent rect. 2 13
453 37.39 atmosphere 995.0 30 > th dose dependent rect. 2 13
457 37.39 humidity 50.0 30 > th dose dependent rect. 4 22
482 37.40 wind 9.0 30 < th dose independent rect. 2 13
550 37.43 wind 1.0 270 > th dose dependent rect. 24 1
556 37.44 humidity 90.0 270 < th dose independent rect. 24 1
560 37.44 humidity 50.0 30 > th dose independent rect. 2 13
568 37.44 humidity 50.0 10 > th dose dependent rect. 16 10
605 37.47 atmosphere 1005.0 10 > th dose independent rect. 2 5
614 37.47 temperature 30.0 10 < th dose independent rect. 2 13
652 37.49 wind 1.0 90 > th dose independent rect. 15 11
659 37.49 wind 1.0 90 > th dose dependent rect. 2 1
672 37.49 humidity 50.0 30 < th dose dependent rect. 17 19
675 37.50 humidity 80.0 720 > th dose independent rect. 23 1
698 37.50 humidity 50.0 30 < th dose independent rect. 17 19
709 37.51 humidity 50.0 30 < th dose independent rect. 17 1
728 37.51 radiation 10.0 30 > th dose independent rect. 17 14
736 37.51 humidity 50.0 30 < th dose dependent rect. 17 1
767 37.52 temperature 30.0 90 < th dose independent rect. 4 9
771 37.52 wind 1.0 10 > th dose independent rect. 15 23
772 37.52 wind 1.0 10 > th dose independent rect. 23 23
775 37.52 radiation 40.0 14400 < th dose dependent rect. 23 1
779 37.52 radiation 10.0 10 < th dose dependent rect. 8 18
780 37.52 temperature 30.0 30 > th dose dependent rect. 17 20
783 37.53 wind 9.0 1440 < th dose independent rect. 23 1
784 37.53 temperature 10.0 1440 > th dose independent rect. 23 1
787 37.53 temperature 30.0 1440 < th dose independent rect. 23 1
792 37.53 humidity 50.0 1440 > th dose independent rect. 23 1
802 37.53 atmosphere 995.0 1440 > th dose independent rect. 23 1
803 37.53 radiation 10.0 30 > th dose independent rect. 17 1
804 37.53 radiation 1.0 1440 < th dose independent rect. 23 1
834 37.53 atmosphere 1005.0 30 > th dose independent rect. 21 7
842 37.53 radiation 30.0 1440 < th dose independent rect. 17 10
860 37.53 temperature 10.0 1440 > th dose independent rect. 24 23
864 37.53 radiation 1.0 1440 < th dose dependent rect. 23 1
884 37.54 humidity 60.0 30 > th dose independent rect. 4 9
900 37.55 temperature 25.0 30 > th dose independent rect. 22 1
910 37.55 atmosphere 1005.0 30 > th dose dependent rect. 22 1
919 37.56 humidity 90.0 30 < th dose independent rect. 22 1
926 37.56 humidity 90.0 10 > th dose independent rect. 2 16
930 37.56 radiation 30.0 30 < th dose independent rect. 4 22
931 37.56 humidity 50.0 30 > th dose independent rect. 15 23
932 37.56 temperature 20.0 30 > th dose dependent rect. 22 1
936 37.56 wind 1.0 270 > th dose dependent rect. 24 3
942 37.57 wind 3.0 30 < th dose independent rect. 22 1
944 37.57 humidity 80.0 30 > th dose independent rect. 22 1
946 37.57 atmosphere 1005.0 30 > th dose independent rect. 22 1
952 37.57 humidity 90.0 10 > th dose independent rect. 2 12
959 37.57 temperature 30.0 90 < th dose independent rect. 4 17
965 37.57 temperature 10.0 30 > th dose dependent rect. 22 1
968 37.57 atmosphere 995.0 30 > th dose dependent rect. 22 1
976 37.57 atmosphere 995.0 10 > th dose dependent rect. 2 16
979 37.58 wind 1.0 30 > th dose independent rect. 22 1
984 37.58 precipitation 0.1 30 < th dose independent rect. 22 1