Os02g0160000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y- 1140 of Kluyveromyces lactis.
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Os02g0160000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y- 1140 of Kluyveromyces lactis.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.96 | 0.257 | 9.37 | 0.928 | 0.912 | -1.1 | 0.174 | -1.17 | 0.599 | 20.9 | 24.9 | 355 | -- | -- |
| 31.72 | 0.262 | 9.39 | 0.747 | 0.908 | -0.989 | 0.275 | -- | 0.558 | 20.9 | 25.08 | 361 | -- | -- |
| 30.06 | 0.255 | 9.37 | 0.924 | 0.905 | -1.1 | -- | -1.18 | 0.597 | 20.9 | 24.99 | 360 | -- | -- |
| 31.97 | 0.263 | 9.39 | 0.734 | 0.908 | -0.993 | -- | -- | 0.558 | 20.9 | 25.1 | 360 | -- | -- |
| 64.66 | 0.375 | 9.36 | 0.73 | -- | -1.52 | -- | -0.612 | 0.552 | -- | 41.31 | 603 | -- | -- |
| 45.93 | 0.318 | 9.35 | 0.999 | 0.993 | -- | 0.311 | -- | 0.759 | 20.5 | -- | -- | -- | -- |
| 46.23 | 0.318 | 9.35 | 0.989 | 0.992 | -- | -- | -- | 0.759 | 20.5 | -- | -- | -- | -- |
| 64.93 | 0.375 | 9.37 | 0.623 | -- | -1.53 | -- | -- | 0.523 | -- | 56.14 | 607 | -- | -- |
| 44.62 | 0.311 | 9.42 | -- | 0.882 | -1.31 | -- | -- | 0.426 | 21.2 | 25.1 | 348 | -- | -- |
| 101.28 | 0.47 | 9.32 | 0.984 | -- | -- | -- | -- | 0.75 | -- | -- | -- | -- | -- |
| 71.99 | 0.397 | 9.37 | -- | 0.988 | -- | -- | -- | 0.649 | 20.6 | -- | -- | -- | -- |
| 74.23 | 0.401 | 9.39 | -- | -- | -1.76 | -- | -- | 0.426 | -- | 38.46 | 621 | -- | -- |
| 126.84 | 0.526 | 9.34 | -- | -- | -- | -- | -- | 0.64 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 23 | 30.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 32 | 30.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 39 | 30.22 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 64 | 30.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 113 | 31.62 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 115 | 31.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 122 | 31.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 271 | 32.63 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 283 | 32.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 321 | 32.79 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 325 | 32.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 374 | 32.98 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 443 | 33.26 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 633 | 33.90 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 653 | 33.97 | wind | 3 | 14400 | < th | dose dependent | sin | 11 | NA |
| 701 | 34.09 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 14 |
| 759 | 34.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 805 | 34.28 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 825 | 34.31 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 15 |
| 841 | 34.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 846 | 34.35 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 10 |
| 866 | 34.37 | temperature | 20 | 720 | > th | dose independent | sin | 14 | NA |
| 898 | 34.40 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 952 | 34.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 969 | 34.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |