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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0158900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SNF4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0145) R2 : 0.562
β1 : -0.0852 (0.0531) R2dD : 0.00283 R2D : -0.00644
β2 : -- (--) R2dC : -- R2C : --
β3 : 20.7 (0.887) R2dE : 5.87 R2E : -5.02
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -50.9 (2.27) R2dD*E : 5.56 R2D*E : -5.29
γ1 : 0.0822 (0.0308) R2dN8 : 0.00871 R2N8 : -0.00842
σ : 0.27
deviance : 33.54
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.773
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.83

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.97 0.27 2.91 -0.0779 0.0923 20.4 -0.32 -50.5 0.08 7.69 9.82 10 12 1.83
72.14 0.399 2.88 0.0144 0.126 1.65 -0.307 -- 0.0617 9.18 9.82 10 12 1.83
33.05 0.268 2.91 -0.0897 0.0999 20.4 -- -50.4 0.0795 7.87 9.775 10 12 1.83
71 0.392 2.88 0.0197 0.116 1.12 -- -- 0.0642 9.04 10.61 8 12 1.77
33.54 0.27 2.92 -0.0852 -- 20.7 -- -50.9 0.0822 -- 9.773 10 12 1.83
75 0.406 2.88 0.0338 0.14 -- -0.212 -- 0.0586 9.65 -- -- -- --
75.13 0.406 2.88 0.0268 0.141 -- -- -- 0.0589 10.3 -- -- -- --
66.34 0.379 2.87 0.0366 -- 2.05 -- -- 0.0881 -- 14.98 3 12 1.79
66 0.378 2.88 -- 0.144 2.05 -- -- 0.0898 9.07 14.51 8 12 1.79
76.35 0.408 2.88 0.0247 -- -- -- -- 0.0585 -- -- -- -- --
75.15 0.406 2.88 -- 0.141 -- -- -- 0.0559 10.3 -- -- -- --
66.34 0.379 2.88 -- -- 2.05 -- -- 0.0771 -- 15.06 9 12 1.81
76.37 0.408 2.88 -- -- -- -- -- 0.0558 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.73 radiation 10 10 < th dose dependent rect. 12 1
3 40.75 radiation 10 30 < th dose independent rect. 11 2
7 42.62 wind 1 90 < th dose dependent rect. 10 1
18 54.94 wind 1 90 < th dose independent rect. 11 1
50 64.79 atmosphere 995 10 > th dose independent sin 8 NA
56 64.90 atmosphere 1000 10 < th dose independent rect. 17 1
63 64.90 atmosphere 1000 10 < th dose dependent rect. 17 1
76 65.06 temperature 30 10 > th dose independent rect. 17 1
80 65.07 humidity 70 10 < th dose independent rect. 18 1
183 65.52 temperature 30 90 > th dose dependent rect. 16 1
222 65.79 radiation 10 90 > th dose dependent rect. 17 1
261 66.05 atmosphere 995 30 < th dose dependent sin 8 NA
483 66.08 atmosphere 995 10 < th dose independent sin 8 NA
575 66.15 radiation 10 90 > th dose independent rect. 17 1
714 67.34 radiation 10 10 < th dose independent rect. 6 7
822 68.18 temperature 30 10 > th dose independent sin 12 NA
823 68.19 humidity 70 10 < th dose dependent rect. 18 1
861 68.63 atmosphere 995 10 > th dose independent rect. 7 23
866 68.69 temperature 30 10 < th dose independent sin 12 NA
871 68.73 atmosphere 995 270 > th dose independent sin 4 NA
965 69.15 atmosphere 995 270 > th dose independent sin 22 NA
974 69.21 wind 5 10 > th dose dependent rect. 17 1
978 69.26 wind 7 90 > th dose dependent rect. 16 1