Os02g0158600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0158600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.1 | 0.346 | 11.3 | -0.156 | 0.683 | -0.72 | -0.517 | -0.533 | 0.176 | 1.98 | 20.4 | 731 | -- | -- |
| 54.22 | 0.343 | 11.3 | -0.0384 | 0.695 | -0.748 | -0.559 | -- | 0.194 | 1.96 | 21.39 | 739 | -- | -- |
| 54.81 | 0.345 | 11.3 | -0.225 | 0.759 | -0.657 | -- | -0.844 | 0.144 | 2.33 | 20.62 | 915 | -- | -- |
| 55.23 | 0.346 | 11.3 | -0.0299 | 0.699 | -0.744 | -- | -- | 0.206 | 1.9 | 21.81 | 772 | -- | -- |
| 62.97 | 0.372 | 11.2 | 0.145 | -- | -1.18 | -- | 0.704 | 0.313 | -- | 20.62 | 915 | -- | -- |
| 66.38 | 0.382 | 11.3 | -0.235 | 0.694 | -- | -0.588 | -- | 0.0717 | 3.16 | -- | -- | -- | -- |
| 67.5 | 0.385 | 11.3 | -0.223 | 0.692 | -- | -- | -- | 0.0751 | 3.2 | -- | -- | -- | -- |
| 62.65 | 0.369 | 11.3 | 0.0631 | -- | -1.14 | -- | -- | 0.315 | -- | 21.1 | 106 | -- | -- |
| 55.25 | 0.346 | 11.3 | -- | 0.704 | -0.752 | -- | -- | 0.209 | 1.89 | 21.8 | 777 | -- | -- |
| 94.7 | 0.455 | 11.3 | -0.194 | -- | -- | -- | -- | 0.0932 | -- | -- | -- | -- | -- |
| 68.81 | 0.388 | 11.3 | -- | 0.688 | -- | -- | -- | 0.0999 | 3.2 | -- | -- | -- | -- |
| 62.34 | 0.368 | 11.3 | -- | -- | -1.14 | -- | -- | 0.274 | -- | 20.57 | 87 | -- | -- |
| 95.69 | 0.457 | 11.3 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.99 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 14 | 53.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 15 | 53.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 17 | 53.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 25 | 53.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 27 | 53.89 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 30 | 53.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 44 | 54.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 49 | 54.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 51 | 54.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 58 | 54.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 16 |
| 59 | 54.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 64 | 54.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 74 | 54.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 84 | 54.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 86 | 54.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 87 | 54.15 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 102 | 54.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 120 | 54.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 127 | 54.28 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 129 | 54.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 138 | 54.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 140 | 54.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 182 | 54.45 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 192 | 54.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 197 | 54.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 199 | 54.50 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 12 |
| 214 | 54.53 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 245 | 54.61 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 252 | 54.63 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 5 |
| 260 | 54.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 264 | 54.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 275 | 54.67 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 276 | 54.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 284 | 54.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 285 | 54.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 308 | 54.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 321 | 54.71 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 336 | 54.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 342 | 54.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 366 | 54.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 468 | 54.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 513 | 54.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 611 | 54.87 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 710 | 54.92 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 812 | 54.96 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 16 |
| 813 | 54.96 | temperature | 20 | 90 | > th | dose dependent | sin | 21 | NA |
| 880 | 54.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 906 | 54.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 21 |