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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0157400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.69 (0.0317) R2 : 0.473
β1 : 1.32 (0.116) R2dD : 0.161 R2D : 0.127
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.85 (0.123) R2dE : 0.262 R2E : 0.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.365 (0.0684) R2dN8 : 0.0496 R2N8 : 0.0425
σ : 0.59
deviance : 160.51
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.14
memory length : 1988
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.21 0.589 8.66 1.44 1.01 1.56 -1.05 1.68 0.462 15.5 1.02 1405 -- --
153.63 0.577 8.68 1.38 0.989 1.3 -1.29 -- 0.424 15.4 2.09 1415 -- --
159.81 0.589 8.66 1.43 1.05 1.62 -- 1.84 0.461 15.1 1.01 1371 -- --
155.14 0.58 8.67 1.27 0.754 1.62 -- -- 0.408 16.3 2.08 1507 -- --
168.61 0.605 8.69 1.57 -- 2 -- 1.08 0.36 -- 2.07 2038 -- --
186 0.639 8.65 1.49 0.934 -- -1.18 -- 0.593 15.9 -- -- -- --
189.82 0.645 8.66 1.47 0.936 -- -- -- 0.586 16.2 -- -- -- --
160.51 0.59 8.69 1.32 -- 1.85 -- -- 0.365 -- 2.14 1988 -- --
194.54 0.65 8.67 -- 0.9 1.73 -- -- 0.274 16.9 1.88 1474 -- --
237.24 0.72 8.65 1.43 -- -- -- -- 0.562 -- -- -- -- --
246.67 0.735 8.69 -- 0.907 -- -- -- 0.423 16.2 -- -- -- --
207.28 0.671 8.71 -- -- 1.93 -- -- 0.264 -- 1.863 1998 -- --
291.25 0.797 8.69 -- -- -- -- -- 0.403 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.11 precipitation 0.1 270 > th dose independent rect. 2 2
2 148.16 precipitation 0.1 270 > th dose dependent rect. 2 2
9 153.03 radiation 1.0 14400 < th dose dependent rect. 22 7
16 153.53 wind 1.0 43200 < th dose dependent rect. 2 2
19 154.23 radiation 1.0 14400 < th dose dependent rect. 3 2
22 154.83 wind 1.0 43200 > th dose independent rect. 2 2
23 154.98 radiation 1.0 1440 < th dose dependent rect. 5 12
24 155.34 radiation 1.0 14400 < th dose independent rect. 18 11
25 155.37 temperature 20.0 43200 < th dose independent rect. 7 1
26 155.47 wind 1.0 43200 < th dose independent rect. 2 2
29 155.62 temperature 20.0 43200 > th dose independent rect. 22 1
32 155.66 temperature 20.0 43200 < th dose independent rect. 22 1
34 155.69 temperature 20.0 43200 > th dose independent rect. 7 1
36 155.71 humidity 80.0 43200 > th dose dependent rect. 20 5
37 155.75 wind 1.0 43200 < th dose dependent rect. 1 4
38 155.76 temperature 25.0 43200 < th dose dependent rect. 14 1
39 155.79 radiation 1.0 1440 < th dose dependent rect. 19 22
40 155.81 radiation 1.0 1440 < th dose dependent rect. 22 19
46 155.87 humidity 70.0 43200 > th dose dependent rect. 13 13
51 155.98 humidity 70.0 43200 > th dose dependent rect. 14 11
56 156.00 radiation 1.0 4320 > th dose independent rect. 18 11
72 156.18 temperature 20.0 43200 > th dose independent rect. 24 1
76 156.19 humidity 80.0 43200 > th dose dependent rect. 21 3
82 156.23 temperature 20.0 43200 < th dose independent rect. 24 1
87 156.25 radiation 1.0 1440 < th dose dependent rect. 9 8
89 156.26 temperature 20.0 43200 > th dose independent rect. 18 7
91 156.26 temperature 20.0 43200 < th dose independent rect. 14 11
96 156.28 temperature 20.0 43200 < th dose independent rect. 11 14
100 156.29 temperature 20.0 43200 > th dose independent rect. 7 18
103 156.30 temperature 20.0 43200 > th dose independent rect. 13 12
104 156.30 temperature 20.0 43200 > th dose independent rect. 11 14
109 156.31 temperature 20.0 43200 < th dose independent rect. 7 18
153 156.38 radiation 1.0 1440 < th dose dependent rect. 11 6
187 156.42 temperature 20.0 43200 > th dose independent rect. 20 12
190 156.43 temperature 20.0 43200 < th dose independent rect. 4 1
195 156.43 temperature 20.0 43200 < th dose independent rect. 21 11
199 156.44 temperature 20.0 43200 < th dose independent sin 18 NA
210 156.45 temperature 20.0 43200 > th dose independent rect. 4 1
212 156.45 radiation 1.0 1440 < th dose independent rect. 5 12
232 156.48 temperature 20.0 43200 > th dose independent sin 17 NA
253 156.50 radiation 1.0 1440 > th dose independent rect. 5 12
257 156.51 radiation 1.0 14400 < th dose independent rect. 18 1
266 156.51 temperature 20.0 43200 > th dose independent rect. 18 14
284 156.53 radiation 1.0 14400 < th dose independent rect. 18 6
325 156.56 radiation 1.0 1440 < th dose independent rect. 19 22
347 156.58 radiation 1.0 1440 < th dose independent rect. 23 18
406 156.62 temperature 20.0 43200 < th dose independent rect. 14 18
416 156.63 temperature 20.0 43200 > th dose independent rect. 14 18
526 156.70 temperature 20.0 43200 > th dose independent rect. 18 21
533 156.71 temperature 20.0 43200 > th dose independent rect. 4 4
539 156.71 temperature 20.0 43200 > th dose independent rect. 20 19
561 156.72 temperature 20.0 43200 < th dose independent rect. 20 19
600 156.74 temperature 20.0 43200 < th dose independent rect. 18 21
610 156.75 temperature 20.0 43200 > th dose independent rect. 18 1
621 156.75 wind 5.0 720 > th dose independent rect. 15 19
636 156.76 temperature 20.0 43200 < th dose independent rect. 4 4
658 156.77 radiation 1.0 1440 > th dose independent rect. 11 20
669 156.77 temperature 20.0 43200 < th dose independent rect. 20 23
692 156.79 temperature 20.0 43200 > th dose independent no NA NA
709 156.80 temperature 20.0 43200 < th dose independent no NA NA
747 156.82 temperature 20.0 43200 > th dose independent rect. 24 23
749 156.82 temperature 20.0 43200 < th dose independent rect. 24 23
771 156.86 radiation 1.0 1440 > th dose independent sin 0 NA
806 156.90 radiation 1.0 4320 > th dose independent rect. 18 1
837 156.93 wind 7.0 4320 > th dose independent rect. 17 1
855 156.95 humidity 70.0 43200 > th dose dependent sin 17 NA
893 157.01 radiation 1.0 1440 < th dose independent rect. 11 20
912 157.04 temperature 20.0 14400 > th dose independent rect. 3 14
947 157.08 temperature 20.0 14400 < th dose independent rect. 3 16
948 157.08 temperature 20.0 14400 < th dose independent rect. 24 19
957 157.09 temperature 20.0 14400 < th dose independent rect. 4 13
987 157.15 radiation 1.0 1440 < th dose independent sin 0 NA