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Os02g0157200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.42 (0.0327) R2 : 0.63
β1 : 2.62 (0.119) R2dD : 0.419 R2D : 0.341
β2 : 0.816 (0.0803) R2dC : 0.0847 R2C : 0.0827
β3 : 0.0219 (0.111) R2dE : 3.43e-05 R2E : -0.00748
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.4 (0.476) R2dD*E : 0.116 R2D*E : 0.13
γ1 : 0.538 (0.0706) R2dN8 : 0.0673 R2N8 : 0.0124
σ : 0.599
deviance : 165.3
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C
peak time of C : 15.2
E
wheather : wind
threshold : 9.093
memory length : 4532
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 5.34

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.56 0.601 6.41 2.64 0.819 0.0457 -0.74 5.36 0.546 15.2 9.06 4476 17 5.33
192.82 0.647 6.38 2.73 0.878 0.57 -0.882 -- 0.664 15.1 9.6 11500 17.4 4.88
165.3 0.599 6.42 2.62 0.816 0.0219 -- 5.4 0.538 15.2 9.093 4532 17 5.34
185.49 0.634 6.31 2.85 0.846 0.597 -- -- 0.816 14.9 10.31 16719 18.2 4.71
202.27 0.662 6.42 2.64 -- 0.0423 -- 5.83 0.536 -- 9.155 4457 16.9 5.48
211.01 0.681 6.34 2.65 0.897 -- -0.996 -- 0.665 15.1 -- -- -- --
214.27 0.685 6.34 2.63 0.895 -- -- -- 0.659 15.2 -- -- -- --
226.39 0.701 6.31 2.86 -- 0.653 -- -- 0.812 -- 10.4 15942 18.2 4.74
348.64 0.87 6.25 -- 0.887 1.07 -- -- 0.727 14.5 10.63 19742 20.2 3.84
259.83 0.753 6.34 2.59 -- -- -- -- 0.635 -- -- -- -- --
396.85 0.932 6.41 -- 0.843 -- -- -- 0.366 15.2 -- -- -- --
381.88 0.91 6.37 -- -- 1.08 -- -- 0.569 -- 10.68 20753 20.3 5.52
437.31 0.976 6.41 -- -- -- -- -- 0.348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.11 wind 9 4320 > th dose independent rect. 17 5
4 165.76 wind 9 4320 < th dose independent rect. 17 4
6 166.14 wind 9 4320 > th dose dependent rect. 17 4
7 166.23 wind 9 4320 > th dose independent rect. 17 9
16 167.19 wind 9 4320 < th dose independent rect. 17 9
75 171.13 wind 9 4320 > th dose independent rect. 17 1
78 171.37 wind 9 4320 > th dose dependent rect. 17 1
79 171.39 wind 9 4320 < th dose independent rect. 17 1
159 174.50 wind 9 4320 > th dose dependent sin 13 NA
168 174.76 wind 9 4320 < th dose independent rect. 16 17
210 176.15 wind 9 4320 > th dose independent sin 13 NA
240 177.25 wind 9 4320 < th dose independent sin 13 NA
257 177.83 temperature 20 1440 > th dose independent rect. 21 2
289 178.93 humidity 80 14400 > th dose dependent rect. 22 5
303 179.22 temperature 20 1440 < th dose independent rect. 21 2
309 179.44 temperature 20 1440 < th dose independent rect. 20 4
316 179.62 humidity 80 14400 > th dose dependent rect. 21 7
345 180.16 humidity 90 14400 > th dose independent rect. 23 9
351 180.22 humidity 80 14400 > th dose dependent rect. 24 1
354 180.23 humidity 80 14400 > th dose dependent rect. 22 9
358 180.26 humidity 90 14400 < th dose independent rect. 22 5
366 180.35 humidity 90 14400 > th dose independent rect. 22 6
370 180.38 humidity 90 14400 < th dose independent rect. 22 9
372 180.41 atmosphere 1005 14400 < th dose independent rect. 14 10
373 180.41 atmosphere 1005 14400 < th dose independent rect. 12 12
377 180.42 atmosphere 1005 14400 < th dose independent rect. 9 15
382 180.46 temperature 20 720 > th dose independent rect. 16 20
397 180.51 atmosphere 1005 14400 < th dose independent sin 17 NA
409 180.54 radiation 20 1440 < th dose independent rect. 11 1
415 180.56 atmosphere 1005 14400 < th dose independent rect. 15 1
461 180.67 atmosphere 995 43200 < th dose independent rect. 15 1
501 180.82 atmosphere 995 43200 > th dose independent rect. 15 1
515 180.86 atmosphere 1005 14400 > th dose independent rect. 8 16
520 180.88 atmosphere 1005 14400 > th dose independent rect. 11 16
549 180.94 atmosphere 1005 14400 > th dose independent rect. 11 12
566 180.98 atmosphere 995 43200 < th dose dependent rect. 15 1
567 180.99 atmosphere 1005 14400 > th dose independent sin 18 NA
581 181.02 atmosphere 1005 14400 < th dose independent rect. 9 8
621 181.10 atmosphere 1005 14400 < th dose independent rect. 12 22
658 181.18 atmosphere 1005 14400 > th dose independent rect. 15 12
680 181.22 atmosphere 1005 14400 < th dose independent no NA NA
691 181.23 atmosphere 1005 14400 > th dose independent rect. 8 9
703 181.24 atmosphere 1005 14400 < th dose independent rect. 20 23
712 181.25 atmosphere 1005 14400 < th dose independent rect. 15 23
713 181.25 atmosphere 1005 14400 < th dose independent rect. 18 23
739 181.30 atmosphere 1005 14400 > th dose independent rect. 15 8
804 181.38 atmosphere 1005 14400 > th dose independent rect. 15 23
838 181.43 atmosphere 1005 14400 > th dose independent no NA NA
846 181.44 atmosphere 1005 14400 > th dose independent rect. 19 23
847 181.44 atmosphere 1005 14400 > th dose independent rect. 21 23
855 181.46 atmosphere 995 43200 > th dose independent rect. 14 3
873 181.50 atmosphere 1005 14400 > th dose independent rect. 12 1
927 181.58 atmosphere 995 43200 < th dose independent rect. 14 3
981 181.66 atmosphere 1005 14400 > th dose independent rect. 15 19