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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0157100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0582) R2 : 0.433
β1 : 4.75 (0.344) R2dD : 1.07 R2D : -0.251
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.911 (0.164) R2dE : 0.0557 R2E : -0.313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.64 (0.974) R2dD*E : 0.242 R2D*E : -0.739
γ1 : 1.65 (0.131) R2dN8 : 0.486 R2N8 : -0.0723
σ : 0.842
deviance : 326.53
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.27
memory length : 2459
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.55 0.832 3.98 4.51 0.272 -0.918 1.7 5.42 1.58 21 21.1 1473 -- --
336.49 0.854 4.13 3.34 0.275 -1.03 1.68 -- 1.34 20.5 14.51 19780 -- --
318.76 0.832 3.96 4.62 0.425 -1.02 -- 6.56 1.62 20 21.3 2107 -- --
345.59 0.866 4.13 3.35 0.292 -1.01 -- -- 1.35 19.8 -16.49 19735 -- --
326.53 0.842 3.94 4.75 -- -0.911 -- 6.64 1.65 -- 21.27 2459 -- --
350.02 0.877 4.21 2.63 0.246 -- 1.76 -- 0.978 21.2 -- -- -- --
359.99 0.889 4.21 2.57 0.282 -- -- -- 0.98 19.4 -- -- -- --
350.04 0.871 4.12 3.34 -- -0.989 -- -- 1.34 -- -3.658 20037 -- --
429.85 0.966 4.39 -- 0.274 1.64 -- -- 0.203 19 -75.21 47520 -- --
364.24 0.892 4.21 2.56 -- -- -- -- 0.975 -- -- -- -- --
533.9 1.08 4.28 -- 0.262 -- -- -- 0.694 20 -- -- -- --
412.96 0.946 4.27 -- -- 1.51 -- -- 0.69 -- 34.79 47520 -- --
537.66 1.08 4.27 -- -- -- -- -- 0.691 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.36 humidity 90 43200 > th dose dependent rect. 4 20
6 308.75 humidity 90 43200 > th dose independent rect. 22 1
9 308.82 temperature 20 1440 > th dose dependent rect. 20 1
11 308.89 humidity 90 43200 > th dose dependent rect. 4 11
12 308.92 humidity 90 43200 < th dose independent rect. 22 1
16 308.99 humidity 90 43200 > th dose dependent rect. 3 16
17 308.99 humidity 90 43200 > th dose dependent rect. 8 17
20 309.01 humidity 90 43200 > th dose dependent sin 2 NA
29 309.10 humidity 70 43200 > th dose dependent rect. 12 2
36 309.18 humidity 90 43200 > th dose dependent rect. 18 5
50 309.40 humidity 90 43200 > th dose dependent rect. 5 5
71 309.64 humidity 90 43200 > th dose independent rect. 6 19
82 309.72 radiation 1 43200 < th dose dependent rect. 17 3
84 309.72 radiation 1 43200 < th dose dependent rect. 17 6
85 309.72 radiation 1 43200 < th dose dependent rect. 17 8
98 309.75 humidity 90 43200 > th dose independent rect. 9 15
101 309.77 humidity 90 43200 > th dose dependent rect. 21 2
115 309.88 humidity 90 43200 < th dose independent rect. 7 18
122 309.90 humidity 90 43200 > th dose dependent sin 19 NA
129 309.95 humidity 90 43200 < th dose independent rect. 18 5
162 310.13 radiation 1 43200 < th dose dependent rect. 17 15
171 310.16 humidity 90 43200 > th dose independent rect. 18 5
178 310.18 humidity 80 43200 < th dose independent rect. 12 2
202 310.30 humidity 80 43200 < th dose independent rect. 10 4
208 310.31 humidity 80 43200 > th dose dependent rect. 18 1
212 310.32 humidity 80 43200 < th dose independent rect. 10 9
216 310.33 radiation 1 43200 < th dose dependent rect. 17 21
242 310.42 humidity 80 43200 > th dose independent rect. 9 10
249 310.45 radiation 1 43200 < th dose independent rect. 17 3
250 310.45 radiation 1 43200 < th dose independent rect. 17 6
251 310.45 radiation 1 43200 < th dose independent rect. 17 8
266 310.48 radiation 1 43200 < th dose independent rect. 17 16
267 310.48 radiation 1 43200 > th dose independent rect. 17 21
269 310.49 radiation 1 43200 < th dose independent rect. 17 21
286 310.51 radiation 1 43200 < th dose dependent sin 13 NA
294 310.53 radiation 1 43200 > th dose independent rect. 17 16
301 310.53 temperature 20 1440 > th dose dependent rect. 17 14
306 310.55 radiation 1 43200 > th dose independent rect. 17 2
329 310.59 humidity 80 43200 > th dose independent rect. 9 6
330 310.59 radiation 1 43200 > th dose independent rect. 17 18
342 310.62 radiation 1 43200 < th dose independent rect. 17 18
358 310.67 humidity 90 43200 > th dose independent sin 3 NA
382 310.72 humidity 90 43200 < th dose independent sin 19 NA
391 310.73 temperature 20 1440 > th dose dependent sin 12 NA
394 310.73 radiation 1 43200 < th dose dependent rect. 10 20
399 310.75 humidity 90 43200 > th dose independent rect. 3 10
404 310.77 humidity 90 43200 > th dose independent sin 19 NA
427 310.81 radiation 1 43200 < th dose dependent rect. 10 16
431 310.82 radiation 1 43200 < th dose dependent rect. 10 9
440 310.82 radiation 1 43200 < th dose dependent rect. 12 20
466 310.87 radiation 1 43200 < th dose dependent rect. 12 14
476 310.88 radiation 1 43200 < th dose dependent rect. 12 7
495 310.90 radiation 1 43200 < th dose dependent rect. 8 22
497 310.90 humidity 90 43200 > th dose dependent rect. 15 23
530 310.94 humidity 90 43200 > th dose dependent no NA NA
586 311.03 humidity 90 43200 > th dose independent rect. 4 7
591 311.04 humidity 90 43200 < th dose independent rect. 15 9
603 311.06 humidity 90 43200 > th dose dependent rect. 21 23
621 311.09 humidity 90 43200 > th dose dependent rect. 18 23
624 311.10 radiation 1 43200 > th dose independent rect. 7 12
643 311.12 radiation 1 43200 > th dose independent rect. 10 23
655 311.13 radiation 1 43200 < th dose independent rect. 10 23
675 311.15 radiation 1 43200 > th dose independent rect. 5 14
685 311.15 radiation 1 43200 < th dose dependent rect. 5 14
711 311.16 radiation 1 43200 < th dose dependent no NA NA
783 311.19 radiation 1 43200 < th dose independent rect. 5 14
818 311.21 radiation 1 43200 < th dose independent rect. 12 21
819 311.21 radiation 1 43200 > th dose independent rect. 12 23
824 311.23 humidity 90 43200 < th dose independent sin 2 NA
825 311.23 radiation 1 43200 > th dose independent rect. 12 21
834 311.24 radiation 1 43200 < th dose independent rect. 12 23
840 311.25 radiation 1 43200 > th dose independent sin 21 NA
841 311.25 radiation 1 43200 > th dose independent no NA NA
911 311.27 radiation 1 43200 < th dose independent sin 11 NA
927 311.28 radiation 1 43200 < th dose independent rect. 7 12
929 311.28 radiation 1 43200 < th dose independent rect. 7 16
935 311.28 radiation 1 43200 < th dose independent rect. 7 23
941 311.29 radiation 1 43200 < th dose independent no NA NA