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Os02g0156800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0307) R2 : 0.628
β1 : 1.65 (0.106) R2dD : 0.26 R2D : 0.185
β2 : 1.03 (0.0673) R2dC : 0.192 R2C : 0.176
β3 : 0.464 (0.235) R2dE : 0.0102 R2E : -0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.83 (1.03) R2dD*E : 0.211 R2D*E : 0.18
γ1 : 0.54 (0.0569) R2dN8 : 0.104 R2N8 : 0.0384
σ : 0.483
deviance : 107.59
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_____
C
peak time of C : 17.2
E
wheather : wind
threshold : 4.67
memory length : 2423
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.86 0.483 10.6 1.65 1.03 0.443 -0.863 8.63 0.546 17.1 4.757 2401 -- --
135.62 0.547 10.4 1.61 1.12 -0.492 -1.49 -- 0.701 16.6 4.757 2401 -- --
107.59 0.483 10.6 1.65 1.03 0.464 -- 8.83 0.54 17.2 4.67 2423 -- --
128.9 0.529 10.4 1.63 1.05 -0.917 -- -- 0.74 17 3.848 2647 -- --
162.47 0.594 10.6 1.6 -- 0.344 -- 8.41 0.496 -- 4.889 2501 -- --
138.42 0.552 10.4 1.69 1.03 -- -1.22 -- 0.715 16.8 -- -- -- --
141.97 0.558 10.4 1.68 1.03 -- -- -- 0.708 17 -- -- -- --
175.33 0.617 10.5 1.32 -- -1.25 -- -- 0.516 -- 6.5 2484 -- --
157.09 0.584 10.4 -- 0.96 -1.43 -- -- 0.909 16.8 6.376 6180 -- --
197.9 0.657 10.4 1.64 -- -- -- -- 0.682 -- -- -- -- --
216.28 0.688 10.5 -- 1 -- -- -- 0.521 17.1 -- -- -- --
208.77 0.673 10.4 -- -- -1.55 -- -- 0.887 -- 6.248 6679 -- --
269.01 0.766 10.5 -- -- -- -- -- 0.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.60 wind 7.0 4320 > th dose independent rect. 17 1
3 107.71 wind 7.0 4320 > th dose independent rect. 17 4
4 107.75 precipitation 0.1 270 > th dose independent rect. 2 2
5 107.77 precipitation 0.1 270 > th dose dependent rect. 2 2
7 108.37 wind 7.0 4320 > th dose dependent rect. 17 1
8 108.49 wind 7.0 4320 < th dose independent rect. 17 4
9 108.59 wind 7.0 4320 < th dose independent rect. 17 1
13 109.11 wind 7.0 4320 > th dose independent rect. 15 6
18 109.53 radiation 1.0 1440 < th dose dependent rect. 9 8
19 109.54 wind 7.0 4320 < th dose independent rect. 15 6
25 109.64 radiation 1.0 1440 < th dose dependent rect. 11 6
54 110.68 radiation 1.0 1440 < th dose dependent rect. 13 3
74 111.22 wind 7.0 4320 > th dose dependent rect. 15 6
85 111.62 radiation 1.0 1440 < th dose independent rect. 13 2
101 111.88 radiation 1.0 1440 < th dose independent rect. 9 6
106 111.95 radiation 1.0 1440 > th dose independent rect. 13 2
112 112.03 radiation 1.0 14400 < th dose dependent rect. 23 6
119 112.21 radiation 1.0 14400 < th dose dependent rect. 19 10
140 112.53 wind 5.0 720 > th dose independent rect. 17 2
144 112.61 radiation 1.0 720 > th dose independent rect. 11 20
168 112.82 radiation 1.0 1440 < th dose independent rect. 11 1
169 112.82 radiation 1.0 1440 < th dose dependent rect. 11 1
175 112.92 humidity 90.0 14400 > th dose independent rect. 5 2
187 113.01 humidity 90.0 14400 < th dose independent rect. 21 5
190 113.02 humidity 90.0 14400 < th dose independent rect. 21 11
198 113.09 wind 5.0 720 > th dose independent rect. 14 19
227 113.30 wind 5.0 720 > th dose independent rect. 14 16
242 113.38 wind 9.0 43200 > th dose dependent rect. 14 3
254 113.44 humidity 90.0 14400 < th dose dependent rect. 22 1
259 113.47 humidity 90.0 14400 > th dose independent rect. 22 4
262 113.51 radiation 1.0 1440 > th dose independent rect. 8 7
266 113.56 humidity 90.0 14400 < th dose independent rect. 5 2
274 113.62 temperature 20.0 43200 < th dose independent rect. 7 1
280 113.66 radiation 1.0 43200 < th dose independent rect. 23 6
295 113.73 radiation 1.0 43200 < th dose independent rect. 21 8
297 113.73 radiation 40.0 43200 < th dose dependent rect. 23 6
298 113.75 radiation 1.0 14400 < th dose independent rect. 18 11
314 113.84 radiation 1.0 14400 < th dose dependent rect. 3 2
316 113.86 wind 5.0 720 < th dose independent rect. 15 17
317 113.86 wind 3.0 720 > th dose dependent rect. 17 2
339 113.94 temperature 20.0 43200 > th dose independent rect. 7 1
341 113.94 radiation 20.0 43200 < th dose dependent rect. 21 8
345 113.96 radiation 1.0 720 < th dose independent rect. 14 5
367 114.04 humidity 90.0 14400 < th dose independent sin 11 NA
374 114.07 humidity 90.0 14400 > th dose independent rect. 22 10
386 114.10 wind 9.0 43200 > th dose dependent rect. 11 6
393 114.13 wind 5.0 720 > th dose independent rect. 16 7
397 114.15 radiation 1.0 720 < th dose independent rect. 3 16
399 114.17 humidity 80.0 14400 > th dose dependent rect. 22 1
411 114.22 radiation 1.0 14400 < th dose independent rect. 9 1
415 114.24 humidity 90.0 14400 < th dose independent rect. 14 17
419 114.25 radiation 1.0 1440 < th dose dependent rect. 5 12
425 114.28 radiation 1.0 43200 > th dose independent rect. 4 1
437 114.28 radiation 1.0 43200 > th dose dependent rect. 4 1
449 114.30 wind 5.0 720 > th dose independent sin 15 NA
459 114.33 humidity 90.0 14400 > th dose dependent rect. 6 1
471 114.38 radiation 1.0 14400 > th dose independent rect. 9 1
473 114.38 wind 5.0 720 < th dose independent rect. 13 21
481 114.43 radiation 1.0 720 < th dose independent rect. 14 14
491 114.47 wind 9.0 43200 > th dose independent rect. 14 3
496 114.49 wind 7.0 4320 > th dose independent sin 15 NA
513 114.58 humidity 80.0 14400 > th dose dependent rect. 21 4
514 114.59 wind 9.0 43200 > th dose independent rect. 11 7
533 114.67 wind 5.0 720 > th dose dependent rect. 15 18
544 114.73 humidity 90.0 720 > th dose dependent rect. 20 1
545 114.73 humidity 50.0 14400 > th dose dependent rect. 22 1
548 114.73 wind 3.0 720 > th dose dependent rect. 14 20
553 114.75 wind 9.0 43200 < th dose independent rect. 11 2
554 114.75 wind 9.0 43200 > th dose independent rect. 12 5
560 114.77 radiation 1.0 720 > th dose independent sin 14 NA
591 114.85 wind 7.0 4320 < th dose independent sin 15 NA
593 114.86 radiation 1.0 43200 < th dose dependent rect. 6 5
608 114.90 wind 3.0 720 > th dose dependent rect. 15 15
614 114.92 radiation 10.0 43200 < th dose independent rect. 18 8
623 114.94 radiation 1.0 720 < th dose independent rect. 23 20
650 115.01 wind 9.0 43200 > th dose independent rect. 11 2
662 115.04 radiation 10.0 43200 < th dose independent rect. 18 1
676 115.08 radiation 10.0 43200 < th dose independent rect. 18 4
680 115.08 radiation 1.0 720 < th dose independent rect. 1 18
683 115.09 radiation 1.0 43200 > th dose independent rect. 7 4
684 115.09 radiation 1.0 43200 < th dose independent rect. 7 4
693 115.11 radiation 1.0 1440 < th dose dependent rect. 19 22
698 115.13 radiation 1.0 43200 < th dose dependent rect. 7 1
701 115.13 radiation 1.0 1440 < th dose dependent rect. 22 19
717 115.16 wind 3.0 720 > th dose dependent rect. 16 7
752 115.26 radiation 10.0 43200 < th dose dependent rect. 18 1
761 115.29 radiation 10.0 43200 < th dose dependent rect. 18 8
768 115.30 radiation 1.0 1440 < th dose independent rect. 11 19
771 115.30 radiation 10.0 43200 < th dose dependent rect. 18 4
789 115.34 wind 9.0 43200 > th dose independent rect. 16 1
800 115.36 humidity 90.0 14400 > th dose independent sin 10 NA
808 115.37 wind 9.0 43200 < th dose independent rect. 11 7
859 115.47 temperature 25.0 43200 < th dose dependent rect. 14 1
895 115.54 humidity 90.0 14400 > th dose independent rect. 14 17
923 115.59 radiation 1.0 720 < th dose independent rect. 7 21
930 115.61 temperature 20.0 43200 < th dose independent rect. 7 9
937 115.61 radiation 1.0 720 < th dose dependent rect. 14 14
961 115.67 temperature 20.0 43200 > th dose independent rect. 7 9
985 115.71 humidity 80.0 14400 > th dose dependent rect. 17 14