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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0156400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0313) R2 : 0.275
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.78 (0.592) R2dE : 0.275 R2E : 0.275
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00392 (0.0659) R2dN8 : 7.27e-06 R2N8 : 6.83e-05
σ : 0.59
deviance : 159.22
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 68.33
memory length : 2
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.58
open length of G : 8.34

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.81 0.556 3.49 0.263 0.236 2.97 0.642 -11.6 0.0577 4.08 79.91 100 1.02 6.99
149.56 0.574 3.48 0.395 0.311 7.9 0.271 -- 0.0348 5.08 66.43 3 1.62 8.32
140.6 0.552 3.49 0.254 0.26 2.94 -- -11.4 0.0546 5.22 79.96 98 1.02 6.99
149.67 0.574 3.48 0.394 0.317 7.84 -- -- 0.0335 5.49 68.27 2 1.62 8.35
143.99 0.559 3.5 0.262 -- 3.07 -- -11.4 0.0622 -- 79.92 100 0.99 7.03
209.11 0.678 3.49 0.269 0.368 -- -0.802 -- -0.00575 6.74 -- -- -- --
210.26 0.679 3.49 0.253 0.379 -- -- -- -0.0052 5.85 -- -- -- --
154.89 0.582 3.49 0.407 -- 7.97 -- -- 0.0418 -- 68.27 2 1.62 8.35
153.74 0.581 3.49 -- 0.325 7.66 -- -- -0.011 5.45 68.24 2 1.6 8.33
217.72 0.689 3.5 0.265 -- -- -- -- 0.00364 -- -- -- -- --
211.95 0.681 3.5 -- 0.383 -- -- -- -0.0334 5.82 -- -- -- --
159.22 0.59 3.5 -- -- 7.78 -- -- -0.00392 -- 68.33 2 1.58 8.34
219.57 0.692 3.5 -- -- -- -- -- -0.0257 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.46 humidity 80 90 < th dose independent rect. 1 7
4 142.23 humidity 80 90 < th dose independent rect. 4 4
10 144.54 humidity 80 10 < th dose dependent rect. 5 3
14 144.69 humidity 80 10 < th dose dependent rect. 2 6
21 145.14 humidity 80 10 < th dose independent rect. 6 2
43 146.46 humidity 80 10 < th dose dependent rect. 20 12
69 149.01 humidity 70 90 < th dose dependent rect. 18 14
71 149.08 humidity 70 30 < th dose independent rect. 18 14
78 149.14 radiation 10 10 > th dose dependent rect. 16 16
79 149.18 radiation 20 90 > th dose independent rect. 6 1
93 149.18 radiation 20 90 > th dose dependent rect. 6 1
113 149.25 radiation 10 10 > th dose dependent rect. 6 2
261 149.52 atmosphere 1005 10 > th dose dependent rect. 7 1
786 161.57 radiation 30 10 < th dose independent sin 11 NA
851 168.50 atmosphere 1005 10 > th dose independent rect. 7 1
905 171.52 radiation 10 10 > th dose dependent sin 11 NA
943 173.94 radiation 20 10 > th dose independent sin 11 NA
963 174.59 humidity 70 10 < th dose independent sin 11 NA
987 175.52 wind 7 30 > th dose dependent rect. 1 10