Os02g0155400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os02g0155400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.22 | 0.394 | 3 | 0.0405 | 0.0597 | 1.28 | 0.16 | 0.413 | 0.117 | 10.6 | 9 | 79 | -- | -- |
| 70.24 | 0.39 | 3 | 0.0407 | 0.0586 | 1.18 | 0.172 | -- | 0.118 | 10.7 | 9.1 | 79 | -- | -- |
| 70.31 | 0.391 | 3 | 0.0466 | 0.0613 | 1.32 | -- | 0.579 | 0.116 | 9.78 | 9.013 | 79 | -- | -- |
| 70.35 | 0.391 | 3 | 0.0459 | 0.0603 | 1.17 | -- | -- | 0.117 | 9.82 | 9.098 | 79 | -- | -- |
| 70.53 | 0.391 | 3 | 0.0459 | -- | 1.34 | -- | 0.599 | 0.118 | -- | 9 | 78 | -- | -- |
| 75.66 | 0.408 | 3 | -0.0473 | 0.0889 | -- | 0.0724 | -- | 0.0835 | 11.9 | -- | -- | -- | -- |
| 75.69 | 0.407 | 3 | -0.0442 | 0.0888 | -- | -- | -- | 0.0839 | 12.1 | -- | -- | -- | -- |
| 70.58 | 0.391 | 3 | 0.0449 | -- | 1.18 | -- | -- | 0.118 | -- | 9.1 | 79 | -- | -- |
| 70.4 | 0.391 | 3 | -- | 0.0622 | 1.15 | -- | -- | 0.112 | 9.81 | 9.1 | 79 | -- | -- |
| 76.18 | 0.408 | 3.01 | -0.047 | -- | -- | -- | -- | 0.0826 | -- | -- | -- | -- | -- |
| 75.74 | 0.407 | 3 | -- | 0.0894 | -- | -- | -- | 0.0889 | 12.2 | -- | -- | -- | -- |
| 70.63 | 0.391 | 3 | -- | -- | 1.16 | -- | -- | 0.113 | -- | 9.094 | 79 | -- | -- |
| 76.24 | 0.408 | 3 | -- | -- | -- | -- | -- | 0.0878 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.16 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 63.70 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 1 |
| 5 | 63.82 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 5 |
| 9 | 63.89 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 21 | 63.94 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 5 |
| 23 | 63.97 | wind | 9 | 90 | > th | dose independent | sin | 13 | NA |
| 25 | 63.99 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 10 |
| 42 | 64.10 | wind | 9 | 90 | < th | dose independent | sin | 13 | NA |
| 46 | 64.13 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 7 |
| 52 | 64.17 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 12 |
| 125 | 64.51 | wind | 9 | 90 | > th | dose dependent | sin | 13 | NA |
| 130 | 64.79 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 1 |
| 135 | 64.79 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 224 | 65.63 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 1 |
| 250 | 65.63 | radiation | 10 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 450 | 68.69 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 477 | 68.84 | wind | 9 | 10 | < th | dose independent | sin | 13 | NA |
| 548 | 69.14 | wind | 3 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 620 | 69.30 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 628 | 69.36 | wind | 9 | 10 | > th | dose independent | sin | 14 | NA |
| 725 | 69.67 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 17 | 1 |
| 796 | 69.97 | humidity | 80 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 840 | 70.19 | wind | 7 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 875 | 70.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 901 | 70.38 | wind | 9 | 10 | < th | dose independent | rect. | 7 | 23 |
| 937 | 70.47 | wind | 9 | 90 | > th | dose independent | rect. | 1 | 19 |