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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0154700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.112) R2 : 0.255
β1 : 8.11 (1.03) R2dD : 8.72 R2D : -8.36
β2 : -- (--) R2dC : -- R2C : --
β3 : -25 (3.66) R2dE : 37.8 R2E : -42.6
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 248 (34.9) R2dD*E : 46.9 R2D*E : -43.7
γ1 : 0.287 (0.0697) R2dN8 : 0.0448 R2N8 : -1.23
σ : 0.577
deviance : 153.73
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.18
memory length : 5093
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.52
open length of G : 0.667

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.68 0.581 3.22 7.69 0.226 -24.4 0.483 243 0.141 5.76 29.2 4987 7.53 0.702
180.58 0.631 3.94 0.853 0.301 -0.513 0.656 -- 0.104 5.83 29.2 4987 7.53 0.702
151.84 0.574 3.19 7.89 0.2 -24.5 -- 243 0.253 6.14 29.19 5074 7.53 0.683
169.39 0.606 3.96 0.78 0.279 0.716 -- -- 0.0711 5.87 30.2 4983 8.07 0.183
153.73 0.577 3.18 8.11 -- -25 -- 248 0.287 -- 29.18 5093 7.52 0.667
180.84 0.63 3.94 0.852 0.298 -- 0.645 -- 0.105 5.8 -- -- -- --
181.82 0.631 3.95 0.855 0.302 -- -- -- 0.102 5.46 -- -- -- --
172.19 0.611 3.94 0.823 -- 1.07 -- -- 0.144 -- 30.26 5471 8.28 0.421
184.77 0.633 3.96 -- 0.317 1.14 -- -- 0.0487 5.31 29.99 5016 8.07 0.21
186.57 0.638 3.95 0.865 -- -- -- -- 0.11 -- -- -- -- --
201.1 0.663 3.97 -- 0.317 -- -- -- 0.00718 5.35 -- -- -- --
190 0.642 3.96 -- -- 1.14 -- -- 0.0555 -- 29.82 4948 8.22 0.103
206.33 0.67 3.97 -- -- -- -- -- 0.0138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.53 temperature 30.0 4320 > th dose dependent rect. 8 1
15 172.08 wind 7.0 270 < th dose independent rect. 11 10
16 172.25 wind 9.0 10 > th dose independent rect. 17 18
20 172.57 wind 9.0 90 > th dose independent rect. 16 2
21 172.60 temperature 30.0 4320 > th dose independent rect. 8 1
35 172.61 atmosphere 1000.0 1440 > th dose independent rect. 23 2
36 172.62 wind 9.0 90 > th dose dependent rect. 16 2
42 172.86 temperature 30.0 4320 < th dose independent rect. 5 4
43 172.90 wind 9.0 90 > th dose independent rect. 16 10
51 172.91 wind 9.0 90 > th dose independent rect. 16 7
58 172.99 atmosphere 1000.0 1440 < th dose independent rect. 22 1
69 173.10 wind 9.0 10 > th dose independent rect. 18 1
72 173.10 wind 9.0 10 > th dose dependent rect. 18 1
75 173.10 wind 9.0 90 > th dose dependent rect. 16 7
86 173.11 temperature 25.0 90 > th dose independent rect. 15 4
90 173.12 wind 1.0 4320 < th dose dependent rect. 7 1
91 173.14 wind 5.0 90 < th dose independent rect. 3 16
95 173.18 wind 9.0 90 > th dose independent sin 14 NA
124 173.35 wind 7.0 270 < th dose independent rect. 11 22
135 173.50 radiation 20.0 270 > th dose independent rect. 15 1
137 173.51 radiation 20.0 270 > th dose independent rect. 15 16
154 173.53 temperature 15.0 90 > th dose dependent rect. 13 9
163 173.66 atmosphere 1005.0 30 > th dose independent rect. 3 6
175 173.69 radiation 20.0 30 < th dose independent rect. 3 14
195 173.75 wind 9.0 90 > th dose independent rect. 14 4
204 173.81 wind 9.0 90 > th dose independent rect. 14 9
222 173.84 wind 9.0 90 < th dose dependent rect. 3 16
237 173.87 atmosphere 1000.0 1440 < th dose dependent rect. 23 1
240 173.88 humidity 50.0 30 > th dose dependent rect. 17 10
245 173.94 atmosphere 1000.0 270 < th dose dependent rect. 13 22
248 173.96 humidity 80.0 1440 > th dose independent rect. 20 1
253 173.97 wind 9.0 90 > th dose dependent sin 12 NA
254 173.97 wind 9.0 90 > th dose dependent sin 14 NA
260 173.99 wind 1.0 720 < th dose dependent rect. 2 1
261 173.99 atmosphere 1000.0 1440 < th dose dependent rect. 21 5
263 174.00 humidity 80.0 720 < th dose independent rect. 20 1
280 174.01 atmosphere 1000.0 270 < th dose independent rect. 11 21
287 174.04 radiation 10.0 270 > th dose dependent rect. 16 1
290 174.06 wind 7.0 270 < th dose independent rect. 24 22
305 174.11 temperature 25.0 10 < th dose independent rect. 17 10
358 174.19 wind 1.0 4320 < th dose independent rect. 3 2
381 174.21 radiation 20.0 270 < th dose independent rect. 15 11
387 174.22 radiation 40.0 10 < th dose dependent rect. 3 14
390 174.24 wind 1.0 4320 > th dose independent rect. 4 1
391 174.24 humidity 60.0 720 > th dose independent rect. 15 3
400 174.25 atmosphere 1000.0 270 < th dose independent rect. 15 23
401 174.25 temperature 25.0 90 > th dose dependent rect. 15 4
409 174.26 wind 5.0 30 < th dose independent rect. 3 7
422 174.26 humidity 80.0 43200 > th dose dependent rect. 20 3
425 174.27 atmosphere 1000.0 270 < th dose independent rect. 2 22
428 174.27 wind 5.0 720 > th dose dependent rect. 8 8
429 174.27 temperature 10.0 270 > th dose dependent rect. 11 10
432 174.28 temperature 25.0 270 > th dose dependent rect. 13 6
433 174.28 temperature 25.0 90 > th dose dependent rect. 15 11
448 174.30 humidity 50.0 90 > th dose independent rect. 9 18
457 174.31 temperature 25.0 90 > th dose dependent rect. 15 14
460 174.32 temperature 25.0 90 > th dose independent rect. 14 8
473 174.33 atmosphere 1000.0 270 < th dose dependent rect. 18 23
498 174.35 atmosphere 1000.0 270 < th dose independent rect. 18 23
506 174.36 wind 5.0 90 > th dose dependent rect. 17 18
510 174.37 atmosphere 1000.0 270 < th dose dependent rect. 15 17
521 174.39 atmosphere 1000.0 270 < th dose independent no NA NA
524 174.39 atmosphere 1000.0 270 < th dose dependent rect. 9 23
525 174.40 atmosphere 1000.0 270 > th dose independent no NA NA
568 174.43 atmosphere 1000.0 720 < th dose dependent rect. 18 19
570 174.44 atmosphere 1000.0 270 < th dose dependent no NA NA
572 174.45 humidity 70.0 30 > th dose independent rect. 17 10
575 174.45 atmosphere 1000.0 270 < th dose dependent rect. 1 23
576 174.45 atmosphere 1000.0 270 < th dose dependent rect. 3 23
585 174.47 atmosphere 1000.0 270 < th dose independent rect. 15 17
587 174.47 wind 7.0 10 < th dose dependent rect. 3 7
588 174.47 wind 9.0 270 < th dose dependent rect. 12 7
592 174.47 temperature 25.0 270 > th dose dependent rect. 12 18
600 174.49 temperature 25.0 270 > th dose dependent rect. 13 4
610 174.50 humidity 60.0 720 > th dose independent rect. 15 12
620 174.51 humidity 80.0 43200 > th dose dependent rect. 19 5
627 174.52 temperature 30.0 270 < th dose independent rect. 8 17
631 174.53 humidity 60.0 720 > th dose independent rect. 15 5
632 174.53 temperature 30.0 4320 < th dose independent rect. 19 14
633 174.53 temperature 25.0 10 > th dose dependent rect. 16 3
646 174.55 wind 7.0 270 < th dose independent rect. 13 18
659 174.56 wind 9.0 10 > th dose dependent rect. 18 17
664 174.57 temperature 25.0 270 > th dose dependent rect. 15 1
666 174.57 temperature 25.0 90 > th dose dependent rect. 15 18
668 174.58 wind 5.0 720 < th dose independent rect. 11 4
672 174.58 wind 9.0 90 > th dose dependent rect. 14 4
677 174.59 wind 5.0 720 > th dose independent rect. 8 10
705 174.63 radiation 40.0 1440 < th dose independent rect. 15 18
750 174.66 wind 9.0 270 < th dose dependent rect. 11 9
763 174.68 wind 1.0 4320 < th dose dependent rect. 3 2
789 174.70 radiation 1.0 90 < th dose independent rect. 16 11
790 174.70 wind 7.0 90 < th dose independent rect. 15 18
791 174.70 atmosphere 1000.0 720 < th dose independent rect. 19 18
801 174.71 temperature 25.0 90 > th dose dependent sin 15 NA
802 174.71 wind 5.0 720 > th dose dependent rect. 11 5
809 174.72 precipitation 0.1 4320 > th dose dependent rect. 17 1
830 174.73 humidity 80.0 10 > th dose independent rect. 9 18
843 174.74 radiation 40.0 10 < th dose independent rect. 3 7
855 174.75 temperature 30.0 4320 < th dose independent rect. 22 11
858 174.75 atmosphere 1000.0 1440 < th dose dependent rect. 1 1
872 174.76 wind 9.0 90 > th dose dependent rect. 14 9
909 174.78 radiation 20.0 30 < th dose independent rect. 4 18
912 174.78 atmosphere 1005.0 30 > th dose dependent rect. 17 1
939 174.80 humidity 60.0 720 > th dose independent rect. 15 14
942 174.80 temperature 30.0 270 < th dose independent rect. 6 21
952 174.81 humidity 80.0 720 > th dose independent rect. 20 7
972 174.82 wind 9.0 90 < th dose dependent rect. 3 14
998 174.85 humidity 60.0 720 > th dose independent rect. 15 20
999 174.85 wind 3.0 30 > th dose dependent rect. 10 1