Os02g0154200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0154200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.29 | 0.449 | 8.57 | -0.749 | 0.353 | 1.29 | 0.199 | 1.61 | -0.331 | 8.17 | 11.41 | 2046 | -- | -- |
| 92.96 | 0.449 | 8.62 | -1.04 | 0.333 | 1.06 | 0.0756 | -- | -0.421 | 7.56 | 19.62 | 1849 | -- | -- |
| 91.4 | 0.445 | 8.57 | -0.753 | 0.352 | 1.29 | -- | 1.56 | -0.333 | 7.98 | 11.74 | 2028 | -- | -- |
| 92.92 | 0.449 | 8.62 | -1.07 | 0.329 | 1.08 | -- | -- | -0.423 | 7.53 | 19.21 | 1852 | -- | -- |
| 95.93 | 0.456 | 8.58 | -0.764 | -- | 1.16 | -- | 1.5 | -0.316 | -- | 11.26 | 2793 | -- | -- |
| 122.72 | 0.519 | 8.57 | -0.669 | 0.237 | -- | -0.0878 | -- | -0.181 | 7.22 | -- | -- | -- | -- |
| 122.74 | 0.519 | 8.57 | -0.67 | 0.237 | -- | -- | -- | -0.181 | 7.34 | -- | -- | -- | -- |
| 96 | 0.456 | 8.63 | -1.05 | -- | 1.03 | -- | -- | -0.416 | -- | 18.9 | 1460 | -- | -- |
| 117.63 | 0.505 | 8.57 | -- | 0.583 | 0.914 | -- | -- | -0.239 | 6.84 | 21.67 | 480 | -- | -- |
| 125.72 | 0.524 | 8.58 | -0.666 | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
| 134.59 | 0.543 | 8.55 | -- | 0.231 | -- | -- | -- | -0.106 | 7.54 | -- | -- | -- | -- |
| 120.25 | 0.511 | 8.59 | -- | -- | 0.651 | -- | -- | -0.227 | -- | 22.21 | 1457 | -- | -- |
| 137.44 | 0.547 | 8.56 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 4 | 91.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 7 | 91.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 15 |
| 58 | 91.75 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 88 | 91.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 209 | 92.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 227 | 92.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 252 | 92.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 21 |
| 291 | 92.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 304 | 92.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 338 | 92.29 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 340 | 92.30 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 348 | 92.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 405 | 92.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 547 | 92.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 704 | 92.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 814 | 92.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 947 | 93.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 997 | 93.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 17 |