Os02g0154100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0154100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.67 | 0.757 | 3.31 | -1.08 | 0.134 | -0.148 | 1.42 | 2.12 | -0.163 | 22.7 | 10.02 | 93 | -- | -- |
| 267.55 | 0.768 | 3.33 | -1.13 | 0.0747 | -0.236 | 0.768 | -- | -0.206 | 15 | 10.02 | 93 | -- | -- |
| 265.27 | 0.764 | 3.32 | -1.16 | 0.246 | -0.0163 | -- | 1.02 | -0.191 | 22.6 | 20.14 | 106 | -- | -- |
| 268.71 | 0.763 | 3.31 | -1.11 | 0.147 | -0.232 | -- | -- | -0.154 | 22.1 | 31.09 | 122 | -- | -- |
| 263.49 | 0.756 | 3.3 | -1.07 | -- | -0.198 | -- | 1.09 | -0.133 | -- | 10.01 | 95 | -- | -- |
| 269.5 | 0.77 | 3.33 | -1.16 | 0.219 | -- | -0.474 | -- | -0.203 | 23.5 | -- | -- | -- | -- |
| 270.3 | 0.77 | 3.33 | -1.14 | 0.229 | -- | -- | -- | -0.2 | 22.6 | -- | -- | -- | -- |
| 269.57 | 0.765 | 3.33 | -1.07 | -- | -0.243 | -- | -- | -0.168 | -- | 22.16 | 106 | -- | -- |
| 302.03 | 0.809 | 3.3 | -- | 0.153 | -0.247 | -- | -- | -0.0414 | 21.8 | 31.08 | 122 | -- | -- |
| 273.53 | 0.773 | 3.33 | -1.13 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 304.38 | 0.816 | 3.3 | -- | 0.223 | -- | -- | -- | -0.0729 | 22.2 | -- | -- | -- | -- |
| 302.04 | 0.809 | 3.29 | -- | -- | -0.274 | -- | -- | -0.0496 | -- | 20.59 | 93 | -- | -- |
| 307.39 | 0.818 | 3.3 | -- | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 2 | 253.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 5 | 254.10 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 10 |
| 18 | 254.12 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 2 |
| 19 | 254.12 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 20 | 254.18 | humidity | 70 | 30 | < th | dose dependent | rect. | 17 | 16 |
| 39 | 254.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 45 | 254.78 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 48 | 255.12 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 3 |
| 55 | 255.42 | humidity | 60 | 90 | > th | dose independent | rect. | 12 | 23 |
| 62 | 255.91 | humidity | 60 | 10 | > th | dose independent | rect. | 12 | 22 |
| 65 | 256.34 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 73 | 256.77 | humidity | 70 | 10 | < th | dose independent | rect. | 17 | 16 |
| 81 | 257.10 | radiation | 1 | 10 | < th | dose independent | rect. | 6 | 6 |
| 83 | 257.11 | wind | 3 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 90 | 257.29 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 91 | 257.31 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 92 | 257.36 | wind | 3 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 93 | 257.40 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 95 | 257.40 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 97 | 257.40 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 149 | 257.40 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 151 | 257.40 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 153 | 257.40 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 207 | 257.47 | radiation | 1 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 220 | 257.70 | wind | 3 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 242 | 257.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 243 | 257.99 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 248 | 258.02 | radiation | 10 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 253 | 258.07 | radiation | 10 | 10 | > th | dose independent | rect. | 10 | 3 |
| 254 | 258.08 | radiation | 10 | 90 | > th | dose independent | rect. | 14 | 23 |
| 273 | 258.13 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 2 |
| 274 | 258.13 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 291 | 258.14 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 327 | 258.19 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 360 | 258.21 | wind | 5 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 390 | 258.22 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 461 | 258.28 | humidity | 70 | 30 | < th | dose independent | rect. | 19 | 13 |
| 466 | 258.31 | humidity | 80 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 469 | 258.31 | humidity | 80 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 494 | 258.39 | wind | 5 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 521 | 258.45 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 8 |
| 531 | 258.46 | humidity | 70 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 533 | 258.48 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 593 | 258.48 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 742 | 258.56 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 868 | 258.81 | wind | 3 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 871 | 258.81 | radiation | 40 | 90 | < th | dose independent | rect. | 12 | 22 |
| 884 | 258.87 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 6 |
| 917 | 259.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 918 | 259.06 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 4 |
| 936 | 259.17 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 962 | 259.26 | temperature | 30 | 10 | < th | dose independent | rect. | 13 | 21 |
| 967 | 259.28 | wind | 3 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 994 | 259.32 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 22 |