Os02g0154000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0154000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 313.79 | 0.832 | 5.21 | 1.32 | 1.89 | 4.38 | 1.06 | 8.1 | 0.437 | 22.9 | 0.6706 | 1457 | -- | -- |
| 330.83 | 0.847 | 5.06 | 2.14 | 1.38 | 3.28 | 1.52 | -- | 0.667 | 21.6 | 1.404 | 1568 | -- | -- |
| 317.74 | 0.83 | 5.21 | 1.22 | 1.88 | 4.5 | -- | 8.73 | 0.419 | 22.8 | 0.6188 | 1465 | -- | -- |
| 337.66 | 0.856 | 5.07 | 2.03 | 1.33 | 3.29 | -- | -- | 0.591 | 21.2 | 1.41 | 1591 | -- | -- |
| 389.32 | 0.919 | 5.13 | 1.43 | -- | 5.82 | -- | 9.67 | 0.576 | -- | 0.7098 | 1559 | -- | -- |
| 410.49 | 0.95 | 5.16 | 1.47 | 2.04 | -- | 1.12 | -- | 0.223 | 22.8 | -- | -- | -- | -- |
| 415.77 | 0.955 | 5.17 | 1.42 | 2.04 | -- | -- | -- | 0.22 | 22.9 | -- | -- | -- | -- |
| 418.67 | 0.957 | 5.11 | 1.5 | -- | 1.53 | -- | -- | 0.259 | -- | 1.661 | 1596 | -- | -- |
| 432.23 | 0.968 | 5.16 | -- | 1.39 | 2.6 | -- | -- | 0.468 | 21.1 | 2.72 | 1653 | -- | -- |
| 673.36 | 1.21 | 5.11 | 1.47 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 469.23 | 1.01 | 5.2 | -- | 2.05 | -- | -- | -- | 0.0609 | 22.9 | -- | -- | -- | -- |
| 474.76 | 1.02 | 5.14 | -- | -- | 1.54 | -- | -- | 0.113 | -- | 2.72 | 1653 | -- | -- |
| 730.12 | 1.26 | 5.15 | -- | -- | -- | -- | -- | 0.0701 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 309.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 2 | 310.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 8 | 310.52 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 10 | 310.91 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 22 | 312.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 25 | 312.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 28 | 312.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 33 | 312.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 35 | 312.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 94 | 313.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 97 | 313.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 99 | 313.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 107 | 313.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 109 | 313.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 110 | 313.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 117 | 313.63 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 128 | 313.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 140 | 314.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 19 |
| 142 | 314.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 172 | 315.80 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 174 | 316.10 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 178 | 316.27 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 185 | 316.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 187 | 316.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 189 | 316.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 190 | 316.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 197 | 316.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 203 | 316.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 221 | 316.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 234 | 316.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 238 | 317.02 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 290 | 317.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 319 | 318.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 340 | 318.67 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 366 | 318.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 380 | 319.27 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 443 | 319.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 446 | 320.00 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 486 | 320.20 | temperature | 25 | 14400 | > th | dose dependent | sin | 20 | NA |
| 488 | 320.20 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 495 | 320.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 544 | 320.45 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 699 | 321.04 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 702 | 321.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 726 | 321.14 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 747 | 321.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 21 |
| 801 | 321.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 805 | 321.40 | temperature | 20 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 822 | 321.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 830 | 321.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 906 | 321.68 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 914 | 321.70 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 915 | 321.70 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 946 | 321.83 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |