Os02g0153900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0153900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.33 | 0.599 | 8.22 | 0.14 | 2.42 | -1.37 | 0.523 | 2.86 | 0.565 | 15.9 | 25.74 | 1304 | -- | -- |
| 170.08 | 0.607 | 8.32 | -0.585 | 2.45 | -0.959 | 0.48 | -- | 0.319 | 15.7 | 25.62 | 1416 | -- | -- |
| 163.08 | 0.595 | 8.22 | 0.114 | 2.42 | -1.36 | -- | 2.73 | 0.56 | 15.9 | 25.73 | 1304 | -- | -- |
| 169.35 | 0.606 | 8.31 | -0.531 | 2.47 | -1.09 | -- | -- | 0.337 | 15.7 | 25.8 | 1406 | -- | -- |
| 454.8 | 0.993 | 8.21 | 0.255 | -- | -2.01 | -- | 2.99 | 0.713 | -- | 25.54 | 1178 | -- | -- |
| 203.92 | 0.669 | 8.4 | -1.02 | 2.58 | -- | 0.316 | -- | -0.068 | 15.8 | -- | -- | -- | -- |
| 204.21 | 0.669 | 8.4 | -1.02 | 2.58 | -- | -- | -- | -0.0662 | 15.8 | -- | -- | -- | -- |
| 463.72 | 1 | 8.25 | -0.533 | -- | -1.88 | -- | -- | 0.52 | -- | 25.6 | 1183 | -- | -- |
| 179.07 | 0.623 | 8.31 | -- | 2.51 | -1.19 | -- | -- | 0.364 | 15.9 | 25.7 | 1408 | -- | -- |
| 571.88 | 1.12 | 8.39 | -1.12 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 231.43 | 0.712 | 8.37 | -- | 2.6 | -- | -- | -- | 0.047 | 15.8 | -- | -- | -- | -- |
| 471.35 | 1.01 | 8.22 | -- | -- | -2.03 | -- | -- | 0.629 | -- | 25.56 | 1183 | -- | -- |
| 605.17 | 1.15 | 8.37 | -- | -- | -- | -- | -- | -0.0104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 6 | 157.61 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 8 | 157.69 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 18 |
| 34 | 159.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 40 | 159.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 42 | 159.88 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 82 | 161.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 95 | 162.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 7 |
| 97 | 162.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 98 | 162.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 104 | 162.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 106 | 162.34 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 125 | 162.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 134 | 162.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 162 | 162.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 238 | 163.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 345 | 164.63 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 358 | 164.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 373 | 164.88 | temperature | 25 | 720 | < th | dose independent | sin | 9 | NA |
| 421 | 165.16 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 507 | 165.73 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 537 | 165.89 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 538 | 165.89 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 551 | 165.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 568 | 166.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 653 | 166.45 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 669 | 166.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 703 | 166.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 708 | 166.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 781 | 166.92 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 805 | 166.99 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 819 | 167.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 820 | 167.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 838 | 167.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 924 | 167.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |