Os02g0153500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0153500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.35 | 0.834 | 3.27 | 0.415 | 0.754 | -0.747 | 0.402 | -1.75 | 0.0115 | 4.24 | 19.5 | 208 | -- | -- |
| 322.46 | 0.836 | 3.31 | 0.236 | 0.731 | -0.445 | -0.194 | -- | -0.0314 | 4.01 | 19.8 | 199 | -- | -- |
| 315.73 | 0.828 | 3.28 | 0.394 | 0.753 | -0.729 | -- | -1.61 | 0.00513 | 4.16 | 19.57 | 208 | -- | -- |
| 319.37 | 0.832 | 3.32 | 0.257 | 0.749 | -0.416 | -- | -- | -0.0643 | 3.8 | 21.5 | 84 | -- | -- |
| 345 | 0.865 | 3.26 | 0.483 | -- | -0.49 | -- | -1.56 | 0.0722 | -- | 19.43 | 214 | -- | -- |
| 327.83 | 0.849 | 3.3 | 0.382 | 0.656 | -- | -0.15 | -- | 0.039 | 4.23 | -- | -- | -- | -- |
| 327.89 | 0.848 | 3.3 | 0.383 | 0.656 | -- | -- | -- | 0.0399 | 4.26 | -- | -- | -- | -- |
| 348.87 | 0.87 | 3.32 | 0.238 | -- | -0.246 | -- | -- | -0.00792 | -- | 21.4 | 81 | -- | -- |
| 321.02 | 0.834 | 3.33 | -- | 0.773 | -0.459 | -- | -- | -0.1 | 3.79 | 21.42 | 84 | -- | -- |
| 351.08 | 0.876 | 3.3 | 0.41 | -- | -- | -- | -- | 0.0573 | -- | -- | -- | -- | -- |
| 331.76 | 0.852 | 3.31 | -- | 0.663 | -- | -- | -- | -0.00285 | 4.25 | -- | -- | -- | -- |
| 351.57 | 0.873 | 3.32 | -- | -- | -0.263 | -- | -- | -0.0439 | -- | 21.45 | 84 | -- | -- |
| 355.51 | 0.88 | 3.31 | -- | -- | -- | -- | -- | 0.0118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 301.44 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 2 | 301.44 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 3 | 301.48 | wind | 7.0 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 6 | 301.54 | wind | 7.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 18 | 302.76 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 43 | 311.48 | temperature | 25.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 44 | 311.56 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 8 |
| 47 | 312.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 48 | 312.11 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 53 | 312.68 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 4 |
| 55 | 312.73 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 3 |
| 56 | 312.78 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 5 |
| 60 | 312.93 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 81 | 313.27 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 84 | 313.34 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 85 | 313.39 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 11 |
| 133 | 314.17 | radiation | 1.0 | 30 | < th | dose independent | rect. | 6 | 2 |
| 151 | 314.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 166 | 314.67 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 18 |
| 169 | 314.73 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 181 | 314.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 182 | 314.83 | temperature | 25.0 | 720 | < th | dose independent | sin | 16 | NA |
| 198 | 314.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 12 | 12 |
| 205 | 314.98 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 220 | 315.09 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 226 | 315.09 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 236 | 315.15 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 259 | 315.34 | temperature | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 290 | 315.58 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 299 | 315.62 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 351 | 315.91 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 365 | 316.01 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 5 |
| 367 | 316.01 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 392 | 316.08 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 395 | 316.09 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 464 | 316.31 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 23 | 2 |
| 465 | 316.31 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 524 | 316.48 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 554 | 316.56 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 555 | 316.56 | temperature | 25.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 564 | 316.58 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 570 | 316.60 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 604 | 316.73 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 3 |
| 626 | 316.73 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 653 | 316.75 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 660 | 316.78 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 665 | 316.78 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 711 | 316.92 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 720 | 316.96 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 11 |
| 726 | 316.98 | temperature | 25.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 751 | 317.05 | temperature | 25.0 | 720 | > th | dose independent | sin | 17 | NA |
| 815 | 317.23 | wind | 7.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 891 | 317.37 | radiation | 40.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 933 | 317.44 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 940 | 317.45 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 7 |
| 949 | 317.47 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 983 | 317.53 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 986 | 317.54 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 2 |