Os02g0153400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0153400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 330.7 | 0.854 | 3.12 | -0.0636 | 0.2 | -0.355 | 0.0167 | 2.16 | 0.0825 | 11.4 | 1015 | 4709 | -- | -- |
| 345.16 | 0.865 | 3.13 | -0.244 | 0.235 | -0.534 | 0.00249 | -- | 0.103 | 10.9 | 1016 | 4745 | -- | -- |
| 330.7 | 0.847 | 3.12 | -0.063 | 0.2 | -0.354 | -- | 2.16 | 0.0826 | 11.4 | 1015 | 4709 | -- | -- |
| 342.96 | 0.863 | 3.15 | -0.378 | 0.182 | -0.83 | -- | -- | 0.0273 | 11.2 | 1016 | 4517 | -- | -- |
| 333.21 | 0.85 | 3.12 | -0.0686 | -- | -0.355 | -- | 2.17 | 0.08 | -- | 1015 | 4709 | -- | -- |
| 351.03 | 0.878 | 3.16 | -0.529 | 0.207 | -- | 0.046 | -- | -0.0542 | 11.8 | -- | -- | -- | -- |
| 351.04 | 0.877 | 3.16 | -0.527 | 0.207 | -- | -- | -- | -0.054 | 11.7 | -- | -- | -- | -- |
| 345.36 | 0.866 | 3.14 | -0.354 | -- | -0.859 | -- | -- | 0.0296 | -- | 1016 | 4517 | -- | -- |
| 345.97 | 0.866 | 3.14 | -- | 0.187 | -1.05 | -- | -- | 0.0512 | 11.1 | 1016 | 4520 | -- | -- |
| 353.72 | 0.879 | 3.16 | -0.533 | -- | -- | -- | -- | -0.0566 | -- | -- | -- | -- | -- |
| 358.36 | 0.886 | 3.15 | -- | 0.213 | -- | -- | -- | 0.00469 | 11.9 | -- | -- | -- | -- |
| 348.36 | 0.869 | 3.13 | -- | -- | -1.01 | -- | -- | 0.0807 | -- | 1016 | 4520 | -- | -- |
| 361.22 | 0.887 | 3.15 | -- | -- | -- | -- | -- | 0.0026 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.27 | temperature | 15 | 720 | < th | dose independent | rect. | 23 | 1 |
| 13 | 326.27 | temperature | 15 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 25 | 328.04 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 26 | 328.05 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 27 | 328.05 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 29 | 328.42 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 1 |
| 31 | 328.45 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 52 | 328.54 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 72 | 328.64 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 74 | 328.67 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 80 | 328.67 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 118 | 330.20 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 2 |
| 119 | 330.20 | wind | 9 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 134 | 330.33 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 142 | 330.33 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 172 | 331.12 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 8 | 14 |
| 198 | 331.30 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 23 | NA |
| 206 | 331.36 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 15 |
| 216 | 331.46 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 23 | NA |
| 245 | 331.70 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 6 |
| 277 | 331.96 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 1 | NA |
| 278 | 331.97 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 14 |
| 297 | 332.07 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 308 | 332.11 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 503 | 332.86 | temperature | 20 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 553 | 333.02 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 24 | 8 |
| 566 | 333.06 | atmosphere | 1015 | 4320 | < th | dose independent | no | NA | NA |
| 571 | 333.08 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 581 | 333.10 | atmosphere | 1015 | 4320 | > th | dose independent | no | NA | NA |
| 582 | 333.10 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 3 |
| 589 | 333.10 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 621 | 333.18 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 635 | 333.21 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 637 | 333.21 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 644 | 333.22 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 735 | 333.52 | humidity | 90 | 10 | > th | dose dependent | rect. | 17 | 12 |
| 739 | 333.52 | humidity | 90 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 761 | 333.57 | humidity | 90 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 777 | 333.63 | atmosphere | 1015 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 801 | 333.71 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 822 | 333.80 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 24 | 10 |
| 830 | 333.82 | humidity | 90 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 866 | 333.92 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 938 | 334.12 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 939 | 334.12 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |
| 967 | 334.21 | temperature | 15 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 980 | 334.24 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 990 | 334.27 | atmosphere | 1000 | 1440 | > th | dose dependent | rect. | 14 | 1 |