Os02g0153100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0153100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.11 | 0.433 | 7.73 | 1.41 | 0.436 | -1.48 | 0.292 | 0.323 | 0.489 | 17.7 | 18.3 | 79 | -- | -- |
| 85.14 | 0.43 | 7.73 | 1.36 | 0.436 | -1.5 | 0.359 | -- | 0.475 | 17.6 | 17.99 | 79 | -- | -- |
| 85.19 | 0.43 | 7.72 | 1.42 | 0.421 | -1.47 | -- | 0.415 | 0.492 | 17.8 | 18 | 63 | -- | -- |
| 85.37 | 0.43 | 7.73 | 1.34 | 0.414 | -1.46 | -- | -- | 0.468 | 17.8 | 18 | 64 | -- | -- |
| 92 | 0.449 | 7.73 | 1.32 | -- | -1.23 | -- | 0.3 | 0.436 | -- | 18 | 63 | -- | -- |
| 113.87 | 0.5 | 7.79 | 1 | 0.354 | -- | -0.348 | -- | 0.227 | 23.3 | -- | -- | -- | -- |
| 114.38 | 0.501 | 7.79 | 1.01 | 0.356 | -- | -- | -- | 0.228 | 23.2 | -- | -- | -- | -- |
| 92.09 | 0.449 | 7.73 | 1.27 | -- | -1.23 | -- | -- | 0.422 | -- | 17.9 | 52 | -- | -- |
| 127.98 | 0.527 | 7.78 | -- | 0.311 | -0.887 | -- | -- | 0.241 | 19.5 | 20.24 | 56 | -- | -- |
| 122.29 | 0.517 | 7.78 | 1.02 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 141.49 | 0.556 | 7.81 | -- | 0.366 | -- | -- | -- | 0.115 | 23.4 | -- | -- | -- | -- |
| 131.83 | 0.537 | 7.78 | -- | -- | -0.877 | -- | -- | 0.238 | -- | 20 | 4 | -- | -- |
| 149.88 | 0.571 | 7.8 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.83 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 92 | 81.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 137 | 83.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 155 | 83.95 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 164 | 84.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 172 | 84.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 182 | 84.67 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 194 | 84.93 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 199 | 85.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 200 | 85.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 221 | 85.52 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 226 | 85.56 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 227 | 85.58 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 231 | 85.61 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 244 | 85.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 254 | 85.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 255 | 85.82 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 4 |
| 259 | 85.88 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 262 | 85.89 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 275 | 85.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 281 | 85.98 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 287 | 86.01 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 294 | 86.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 300 | 86.09 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 302 | 86.09 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 1 | 11 |
| 306 | 86.10 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 310 | 86.10 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 318 | 86.11 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 16 |
| 319 | 86.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 341 | 86.15 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 457 | 86.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 480 | 86.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 482 | 86.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 535 | 86.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 537 | 86.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 591 | 86.53 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 615 | 86.57 | humidity | 90.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 623 | 86.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 637 | 86.59 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 646 | 86.60 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 671 | 86.62 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 690 | 86.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 724 | 86.66 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 731 | 86.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 752 | 86.70 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 761 | 86.70 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 775 | 86.72 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 784 | 86.73 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 785 | 86.73 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 786 | 86.73 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 804 | 86.74 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 805 | 86.74 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 807 | 86.74 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 819 | 86.75 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 826 | 86.75 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 834 | 86.75 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 848 | 86.76 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 859 | 86.77 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 864 | 86.77 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 884 | 86.78 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 904 | 86.80 | humidity | 90.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 906 | 86.80 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 945 | 86.83 | humidity | 90.0 | 43200 | > th | dose independent | sin | 13 | NA |