Os02g0152700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0152700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.56 | 0.341 | 7.08 | 2.38 | 0.361 | -1.75 | -0.388 | 3.65 | 0.737 | 21.6 | 22.06 | 1221 | -- | -- |
| 61.67 | 0.366 | 7.18 | 1.51 | 0.285 | -1.77 | -0.24 | -- | 0.486 | 20.3 | 17.38 | 1286 | -- | -- |
| 52.89 | 0.339 | 7.07 | 2.45 | 0.307 | -1.73 | -- | 3.79 | 0.742 | 21.2 | 22.49 | 1297 | -- | -- |
| 60.77 | 0.363 | 7.19 | 1.47 | 0.405 | -2.1 | -- | -- | 0.489 | 21.5 | 14.75 | 1153 | -- | -- |
| 57.22 | 0.352 | 7.06 | 2.46 | -- | -1.66 | -- | 3.69 | 0.741 | -- | 22.49 | 1392 | -- | -- |
| 130.12 | 0.535 | 7.27 | 0.851 | 0.304 | -- | -0.0619 | -- | 0.125 | 18.6 | -- | -- | -- | -- |
| 130.13 | 0.534 | 7.27 | 0.852 | 0.304 | -- | -- | -- | 0.125 | 18.5 | -- | -- | -- | -- |
| 65.28 | 0.376 | 7.18 | 1.48 | -- | -2.01 | -- | -- | 0.494 | -- | 14.58 | 1374 | -- | -- |
| 104.63 | 0.476 | 7.25 | -- | 0.384 | -1.15 | -- | -- | 0.214 | 21.2 | 22.01 | 1140 | -- | -- |
| 134.94 | 0.543 | 7.26 | 0.844 | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
| 149.24 | 0.571 | 7.29 | -- | 0.293 | -- | -- | -- | 0.0302 | 18.7 | -- | -- | -- | -- |
| 109.46 | 0.487 | 7.24 | -- | -- | -1.06 | -- | -- | 0.225 | -- | 22.02 | 1353 | -- | -- |
| 153.74 | 0.579 | 7.28 | -- | -- | -- | -- | -- | 0.0251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 2 | 51.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 27 | 52.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 474 | 55.66 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 923 | 57.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 934 | 57.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 967 | 57.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |