Os02g0152400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribulose bisphosphate carboxylase (EC 4.1.1.39) (Fragment).
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Os02g0152400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribulose bisphosphate carboxylase (EC 4.1.1.39) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.12 | 0.486 | 3.12 | 0.062 | 0.0927 | -0.548 | -0.615 | -4.38 | 0.0164 | 4.99 | 7.502 | 59 | -- | -- |
| 112.34 | 0.497 | 3.16 | 0.081 | 0.109 | 0.692 | -0.382 | -- | 0.000262 | 6.72 | 7.502 | 59 | -- | -- |
| 107.92 | 0.484 | 3.12 | 0.0551 | 0.0968 | -0.582 | -- | -4.21 | 0.0165 | 6.84 | 7.591 | 58 | -- | -- |
| 111.65 | 0.492 | 3.15 | 0.122 | 0.118 | 0.709 | -- | -- | 0.0143 | 6.55 | 7.59 | 59 | -- | -- |
| 108.41 | 0.485 | 3.12 | 0.0521 | -- | -0.62 | -- | -4.26 | 0.0158 | -- | 7.577 | 58 | -- | -- |
| 115.01 | 0.503 | 3.16 | 0.0276 | 0.0986 | -- | -0.307 | -- | -0.0229 | 7.97 | -- | -- | -- | -- |
| 115.28 | 0.503 | 3.16 | 0.0197 | 0.0984 | -- | -- | -- | -0.0223 | 8.41 | -- | -- | -- | -- |
| 112.22 | 0.493 | 3.15 | 0.137 | -- | 0.709 | -- | -- | 0.0241 | -- | 7.8 | 58 | -- | -- |
| 112.02 | 0.493 | 3.16 | -- | 0.115 | 0.651 | -- | -- | -0.00275 | 6.58 | 7.6 | 59 | -- | -- |
| 115.82 | 0.503 | 3.16 | 0.0202 | -- | -- | -- | -- | -0.0213 | -- | -- | -- | -- | -- |
| 115.29 | 0.502 | 3.16 | -- | 0.0985 | -- | -- | -- | -0.0245 | 8.4 | -- | -- | -- | -- |
| 112.46 | 0.494 | 3.16 | -- | -- | 0.744 | -- | -- | -0.000454 | -- | 8.099 | 52 | -- | -- |
| 115.83 | 0.502 | 3.16 | -- | -- | -- | -- | -- | -0.0235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.63 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 94.69 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 4 | 95.58 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 5 | 95.58 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 6 | 95.64 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 7 | 95.76 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 10 | 95.77 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 11 | 95.77 | wind | 7.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 13 | 95.77 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 15 | 95.77 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 16 | 95.77 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 22 | 95.79 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 24 | 95.79 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 25 | 95.79 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 28 | 95.79 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 29 | 95.79 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 31 | 95.79 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 36 | 95.79 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 37 | 95.79 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 39 | 95.79 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 42 | 95.79 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 47 | 95.79 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 48 | 95.80 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 53 | 95.81 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 64 | 95.86 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 73 | 95.94 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 119 | 96.10 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 120 | 96.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 123 | 96.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 127 | 96.10 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 136 | 96.10 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 137 | 96.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 157 | 96.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 185 | 98.06 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 199 | 99.56 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 257 | 102.48 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 266 | 102.79 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 269 | 102.84 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 276 | 103.10 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 288 | 103.69 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 290 | 103.69 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 291 | 103.71 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 296 | 103.75 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 14 |
| 303 | 103.95 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 310 | 104.18 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 16 |
| 311 | 104.18 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 313 | 104.27 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 391 | 104.63 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 394 | 104.69 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 8 |
| 395 | 104.69 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 430 | 104.90 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 466 | 105.00 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 471 | 105.05 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 482 | 105.08 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 15 |
| 507 | 105.19 | wind | 5.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 532 | 105.28 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 536 | 105.28 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 538 | 105.29 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 10 |
| 546 | 105.31 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 552 | 105.33 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 568 | 105.38 | wind | 9.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 574 | 105.39 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 577 | 105.40 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 578 | 105.40 | wind | 5.0 | 90 | > th | dose dependent | rect. | 10 | 3 |
| 709 | 105.62 | wind | 7.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 710 | 105.62 | atmosphere | 1010.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 864 | 105.78 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 12 |
| 922 | 105.90 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 12 |
| 944 | 105.97 | wind | 7.0 | 90 | < th | dose independent | sin | 5 | NA |
| 962 | 105.99 | wind | 9.0 | 720 | < th | dose independent | rect. | 3 | 8 |