Os02g0152300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UspA domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0152300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : UspA domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.55 | 0.543 | 3.75 | 0.582 | 0.692 | -1.4 | -0.401 | -1.5 | 0.448 | 23.5 | 1.342 | 4386 | -- | -- |
| 134.14 | 0.539 | 3.74 | 0.91 | 0.598 | -1.41 | -0.305 | -- | 0.532 | 23 | 1.51 | 4448 | -- | -- |
| 132.87 | 0.537 | 3.75 | 0.593 | 0.611 | -1.4 | -- | -1.44 | 0.45 | 23.4 | 1.51 | 4422 | -- | -- |
| 134.39 | 0.54 | 3.74 | 0.893 | 0.592 | -1.41 | -- | -- | 0.532 | 23 | 1.51 | 4448 | -- | -- |
| 147.13 | 0.565 | 3.73 | 0.671 | -- | -1.83 | -- | -1.41 | 0.492 | -- | 1.51 | 4548 | -- | -- |
| 168.39 | 0.608 | 3.8 | 0.62 | 0.809 | -- | -0.277 | -- | 0.22 | 23.5 | -- | -- | -- | -- |
| 168.72 | 0.608 | 3.79 | 0.631 | 0.81 | -- | -- | -- | 0.221 | 23.5 | -- | -- | -- | -- |
| 148.4 | 0.567 | 3.7 | 0.938 | -- | -1.78 | -- | -- | 0.554 | -- | 1.51 | 4554 | -- | -- |
| 155.34 | 0.58 | 3.74 | -- | 0.609 | -1.29 | -- | -- | 0.523 | 23.3 | 1.576 | 4452 | -- | -- |
| 209.91 | 0.677 | 3.78 | 0.653 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 179.21 | 0.626 | 3.81 | -- | 0.817 | -- | -- | -- | 0.151 | 23.5 | -- | -- | -- | -- |
| 170.54 | 0.608 | 3.72 | -- | -- | -1.56 | -- | -- | 0.441 | -- | 1.604 | 4568 | -- | -- |
| 221.16 | 0.694 | 3.79 | -- | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.07 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 8 | 126.87 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 17 | 127.22 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 23 | 127.29 | humidity | 80 | 14400 | > th | dose dependent | sin | 16 | NA |
| 54 | 127.75 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 65 | 127.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 70 | 127.96 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 74 | 127.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 75 | 127.98 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 89 | 128.07 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 98 | 128.10 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 109 | 128.16 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 130 | 128.26 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 164 | 128.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 174 | 128.50 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 188 | 128.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 232 | 128.89 | humidity | 90 | 14400 | < th | dose independent | sin | 16 | NA |
| 242 | 128.95 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 271 | 129.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 281 | 129.08 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 284 | 129.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 13 |
| 286 | 129.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 297 | 129.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 338 | 129.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 358 | 129.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 373 | 129.25 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 439 | 129.44 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 493 | 129.63 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 21 |
| 498 | 129.65 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 509 | 129.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 629 | 129.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 657 | 130.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 686 | 130.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 770 | 130.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 781 | 130.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 860 | 130.41 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 881 | 130.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 885 | 130.45 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 890 | 130.46 | humidity | 80 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 901 | 130.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 909 | 130.48 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 933 | 130.53 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 938 | 130.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 977 | 130.59 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 6 |