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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0152200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.5 (0.0431) R2 : 0.188
β1 : -0.84 (0.158) R2dD : 0.0533 R2D : 0.0689
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.23 (0.167) R2dE : 0.099 R2E : 0.0833
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.359 (0.0932) R2dN8 : 0.0366 R2N8 : 0.0272
σ : 0.805
deviance : 298.48
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 76
memory length : 2361
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
281.59 0.788 4.51 -1 0.495 -0.775 -0.43 -3.22 0.231 10.8 68 4827 -- --
297.05 0.803 4.51 -0.946 0.52 -1 -0.413 -- 0.219 11.2 67 4758 -- --
282.35 0.783 4.51 -1.01 0.5 -0.767 -- -3.18 0.231 10.9 68 4823 -- --
293.58 0.798 4.53 -0.917 0.498 -0.89 -- -- 0.183 10.6 67 3303 -- --
295.79 0.801 4.53 -0.999 -- -0.881 -- -3.25 0.241 -- 68 5317 -- --
314.99 0.832 4.51 -0.928 0.546 -- -0.31 -- 0.25 10.5 -- -- -- --
315.38 0.832 4.51 -0.941 0.547 -- -- -- 0.249 10.5 -- -- -- --
298.48 0.805 4.5 -0.84 -- -1.23 -- -- 0.359 -- 76 2361 -- --
314.26 0.826 4.53 -- 0.54 -0.972 -- -- 0.295 10.8 69 3230 -- --
333.75 0.854 4.53 -0.95 -- -- -- -- 0.247 -- -- -- -- --
338.7 0.861 4.49 -- 0.553 -- -- -- 0.354 10.6 -- -- -- --
317.19 0.829 4.48 -- -- -1.31 -- -- 0.463 -- 75.42 2356 -- --
357.57 0.883 4.5 -- -- -- -- -- 0.352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 266.49 wind 3.0 14400 < th dose independent rect. 2 2
2 267.03 wind 3.0 14400 > th dose independent rect. 2 2
5 267.57 wind 3.0 14400 > th dose independent rect. 1 4
23 269.32 wind 1.0 14400 > th dose dependent rect. 1 3
26 269.62 wind 5.0 14400 < th dose dependent rect. 1 4
185 274.88 wind 9.0 270 < th dose dependent rect. 6 7
223 275.60 wind 1.0 14400 > th dose dependent rect. 24 11
229 275.71 temperature 15.0 270 > th dose independent rect. 6 7
271 276.44 wind 9.0 14400 < th dose dependent rect. 24 11
293 276.70 temperature 15.0 270 > th dose independent rect. 6 20
310 276.90 temperature 10.0 270 > th dose dependent rect. 6 6
335 277.23 precipitation 0.1 14400 > th dose independent rect. 17 1
364 277.53 temperature 10.0 270 > th dose dependent rect. 20 15
365 277.54 wind 3.0 14400 < th dose independent sin 8 NA
370 277.57 wind 3.0 14400 > th dose independent sin 8 NA
371 277.57 wind 9.0 14400 < th dose independent rect. 5 6
374 277.59 wind 1.0 270 > th dose independent rect. 13 17
391 277.85 temperature 15.0 90 > th dose independent rect. 8 7
392 277.86 precipitation 0.1 270 < th dose independent rect. 13 17
393 277.86 precipitation 0.1 270 < th dose dependent rect. 13 17
403 277.96 temperature 10.0 90 > th dose dependent rect. 8 6
411 278.07 wind 5.0 270 < th dose independent rect. 2 4
413 278.08 humidity 80.0 14400 > th dose independent rect. 10 1
422 278.16 wind 5.0 270 < th dose independent rect. 6 6
430 278.27 humidity 80.0 14400 > th dose dependent rect. 9 1
445 278.44 wind 5.0 270 < th dose independent rect. 7 4
461 278.62 humidity 50.0 270 > th dose independent rect. 6 7
475 278.72 wind 9.0 270 < th dose independent rect. 6 20
492 278.89 humidity 80.0 14400 < th dose independent rect. 10 1
499 278.93 temperature 10.0 270 > th dose dependent rect. 7 4
505 279.00 precipitation 0.1 270 < th dose independent rect. 2 15
506 279.00 precipitation 0.1 270 < th dose dependent rect. 2 15
508 279.02 humidity 80.0 14400 > th dose dependent rect. 9 8
512 279.09 precipitation 0.1 270 < th dose independent rect. 2 4
513 279.09 precipitation 0.1 270 < th dose dependent rect. 2 4
532 279.24 wind 5.0 270 < th dose independent rect. 8 2
540 279.38 humidity 50.0 270 > th dose independent rect. 6 20
542 279.39 precipitation 0.1 90 < th dose independent rect. 15 17
543 279.39 precipitation 0.1 90 < th dose dependent rect. 15 17
546 279.43 temperature 10.0 10 > th dose dependent rect. 9 5
549 279.47 temperature 30.0 270 < th dose dependent rect. 3 2
552 279.48 temperature 20.0 270 > th dose independent rect. 20 16
565 279.61 wind 1.0 14400 > th dose dependent sin 8 NA
569 279.63 temperature 30.0 270 < th dose dependent rect. 1 5
576 279.67 wind 9.0 270 < th dose dependent rect. 2 4
590 279.81 precipitation 0.1 14400 < th dose independent rect. 17 1
591 279.81 precipitation 0.1 14400 < th dose dependent rect. 17 1
596 279.85 radiation 10.0 270 < th dose dependent rect. 15 11
597 279.87 precipitation 0.1 270 < th dose independent rect. 6 7
601 279.87 precipitation 0.1 270 < th dose dependent rect. 6 7
609 279.94 temperature 10.0 270 > th dose independent rect. 2 4
611 279.94 temperature 30.0 270 < th dose independent rect. 2 4
612 279.94 humidity 50.0 270 > th dose independent rect. 2 4
615 279.94 atmosphere 995.0 270 > th dose independent rect. 2 4
616 279.94 atmosphere 1015.0 270 < th dose independent rect. 2 4
617 279.94 radiation 20.0 270 < th dose independent rect. 2 4
636 280.01 radiation 10.0 270 < th dose independent rect. 17 9
639 280.02 humidity 70.0 1440 > th dose dependent rect. 7 4
642 280.04 humidity 50.0 90 > th dose independent rect. 8 7
649 280.08 humidity 90.0 14400 > th dose dependent rect. 16 1
651 280.10 wind 9.0 14400 > th dose independent rect. 6 5
654 280.11 radiation 30.0 270 < th dose dependent rect. 17 9
657 280.12 atmosphere 995.0 270 > th dose independent rect. 6 7
658 280.12 atmosphere 1015.0 270 < th dose independent rect. 6 7
659 280.12 temperature 10.0 270 > th dose independent rect. 13 17
663 280.14 humidity 80.0 14400 > th dose independent rect. 9 6
678 280.23 wind 9.0 270 < th dose independent rect. 17 9
684 280.24 humidity 50.0 270 > th dose independent rect. 17 9
685 280.24 radiation 40.0 270 < th dose dependent rect. 2 4
697 280.31 temperature 10.0 270 > th dose independent rect. 17 9
701 280.31 temperature 10.0 270 > th dose independent rect. 2 15
702 280.31 atmosphere 1015.0 270 < th dose independent rect. 2 15
704 280.33 wind 9.0 270 < th dose dependent rect. 8 2
709 280.36 humidity 50.0 14400 > th dose dependent rect. 11 1
724 280.44 wind 9.0 14400 < th dose dependent sin 7 NA
734 280.48 humidity 90.0 10 < th dose independent rect. 9 5
739 280.50 wind 9.0 90 < th dose independent rect. 8 7
747 280.56 humidity 90.0 90 < th dose independent rect. 8 7
750 280.60 temperature 15.0 270 > th dose independent rect. 7 4
776 280.76 humidity 80.0 14400 > th dose independent rect. 13 1
777 280.76 humidity 90.0 14400 < th dose dependent rect. 11 1
780 280.77 humidity 90.0 14400 > th dose dependent rect. 7 14
785 280.80 temperature 10.0 270 > th dose dependent rect. 8 2
830 281.03 atmosphere 995.0 90 > th dose independent rect. 8 7
837 281.07 atmosphere 1015.0 270 < th dose dependent rect. 3 2
842 281.10 radiation 1.0 270 > th dose independent rect. 6 7
844 281.11 wind 9.0 270 < th dose independent rect. 13 17
863 281.17 humidity 90.0 14400 > th dose independent rect. 7 3
870 281.19 precipitation 0.1 270 < th dose independent rect. 6 20
871 281.19 precipitation 0.1 270 < th dose dependent rect. 6 20
872 281.20 humidity 80.0 14400 < th dose independent rect. 10 5
883 281.25 wind 9.0 90 < th dose independent rect. 8 20
888 281.26 wind 1.0 270 > th dose independent rect. 1 5
889 281.26 atmosphere 995.0 270 > th dose independent rect. 17 9
901 281.33 precipitation 0.1 90 < th dose independent rect. 8 7
902 281.33 precipitation 0.1 270 < th dose independent rect. 11 20
904 281.33 precipitation 0.1 90 < th dose dependent rect. 8 7
906 281.33 precipitation 0.1 270 < th dose dependent rect. 11 20
948 281.50 humidity 90.0 14400 > th dose independent rect. 7 1
949 281.50 humidity 50.0 270 > th dose dependent rect. 17 9
959 281.53 wind 1.0 270 > th dose independent rect. 11 20
973 281.57 atmosphere 1015.0 90 < th dose independent rect. 8 7
974 281.57 temperature 10.0 90 > th dose independent rect. 15 17
987 281.62 humidity 90.0 14400 > th dose dependent rect. 19 1
990 281.63 atmosphere 995.0 270 > th dose independent rect. 6 20
1000 281.65 temperature 15.0 10 > th dose dependent rect. 9 3